PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf17872g00013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 304aa MW: 34807.4 Da PI: 5.5257

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf17872g00013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.1	2.6e-14	24	114	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 +Wt++ + +L++a ++ +l+rg l++++W++v++++ + + +r+ +qCk++++ l+kryk +k+ + + + +s++p Niben101Scf17872g00013.1 24 CWTEEATWTLVDAWGRRFIELNRGFLRQTDWQQVADAVnalhgHTPKTRRTDIQCKNRIDTLKKRYKVEKAKIVESNGTLTSSWP 108 8***********************************99988888899**************9999998888788889 PP trihelix 81 yfdqle 86 +f++l+ Niben101Scf17872g00013.1 109 FFERLD 114 ***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-23	22	115	No hit	No description
Gene3D	G3DSA:1.10.601.10	4.5E-4	190	274	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGEITASSTH VTAPSRPLPF REDCWTEEAT WTLVDAWGRR FIELNRGFLR QTDWQQVADA 60 VNALHGHTPK TRRTDIQCKN RIDTLKKRYK VEKAKIVESN GTLTSSWPFF ERLDFLIGNS 120 GNKVTAVMVS PLPLPSRSPP MGVPLPSRRS TTTTAAAPMV TPVVLPQKRQ MPVLDDSYFR 180 RNYSAVAAAA AAEGGEEDYD DDDDEEDMEM SEEEDGMRRL AKAIERFGEI YERVEEMKQR 240 QMVELEKQRM QFAKDLEVQR MQLFMDTQVQ LQKIKHTKRS GSDGYGLCIS FLDIDVLDIR 300 EHKT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019234266.1	1e-173	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A1J6L6W0	1e-171	A0A1J6L6W0_NICAT; Trihelix transcription factor asil2
STRING	XP_009757835.1	1e-170	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	4e-38	sequence-specific DNA binding transcription factors