PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf17872g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 268aa MW: 30432.5 Da PI: 6.8054 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 45.5 | 2e-14 | 24 | 114 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 +Wt++ + +L++a ++ +l+rg l++++W++v++++ + + +r+ +qCk++++ l+kryk +k+ + + + +s++p Niben101Scf17872g00007.1 24 CWTEEATWTLVDAWGRRFIELNRGFLRQTDWQQVADAVnalhgHTPKTRRTDIQCKNRIDTLKKRYKVEKAKIVESNGTLTSSWP 108 8*************************************99988888899******************9999998888788889** PP trihelix 81 yfdqle 86 +f++l+ Niben101Scf17872g00007.1 109 FFERLD 114 ***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.3E-23 | 22 | 115 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MGEITASSTH VTAPSRPLPF REDCWTEEAT WTLVDAWGRR FIELNRGFLR QTDWQQVADA 60 VNALHGHTPK TRRTDIQCKN RIDTLKKRYK VEKAKIVESN GTLTSSWPFF ERLDFLIGNS 120 GNKVTAMVVS PLPLPSRSPP MGVPLPSRRS TTTTAAAPMV TPVVLPQKRQ MPVFDDSYFR 180 RNYSAVAAAA AAEGGEEDYD DAEEEDMGMS EEKDGMRRLA KAIEKFGEIY ERVEEMKQRQ 240 MVELEKQRMQ FAKDLEKNPT NSILQNTT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019234266.1 | 1e-156 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A1J6L6W0 | 1e-154 | A0A1J6L6W0_NICAT; Trihelix transcription factor asil2 | ||||
STRING | XP_009757835.1 | 1e-152 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1318 | 23 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 1e-40 | sequence-specific DNA binding transcription factors |