PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf17719g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 415aa MW: 45142.1 Da PI: 5.532 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 86.1 | 4.3e-27 | 36 | 132 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e + ++e Niben101Scf17719g00009.1 36 RWTRQEILVLIQGKRVAESRVRRGRtvglelgsgsgQVEPKWASVSSYCKKHGVNRGPVQCRKRWSNLAGDFKKIKEWECGIKEE 120 8**********************9778888888888**********************************************999 PP trihelix 75 ssstcpyfdqle 86 s+s +++ ++l+ Niben101Scf17719g00009.1 121 SESFWVMRNDLR 132 9999*9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 36 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.6E-11 | 36 | 127 | No hit | No description |
PROSITE profile | PS50090 | 6.307 | 36 | 104 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MALEPLTLAF DGDSNGGRQQ SVNGADDGNR APRLPRWTRQ EILVLIQGKR VAESRVRRGR 60 TVGLELGSGS GQVEPKWASV SSYCKKHGVN RGPVQCRKRW SNLAGDFKKI KEWECGIKEE 120 SESFWVMRND LRRERKLPGF FDKEVYEILD RGSGGEEMEA GLALALAPAA AVNEPEALFD 180 SGRSAAADEG LFSDFEQSEA GDKDKHMPIP APTPISGINH QKEPASHPDG GSAQEGKKRK 240 RGVTDTDEEA DSLQHQLAKA LERNGLALAL APAAAVNEPE ALFDSGRSAA ADEGLFSDFE 300 QSEAGDKDKH MPIPAPTPIS GINHQKEPAS HPDGGSAQEG KKRKRGVTDT DEEADSLQHQ 360 LAKALERNGN LLSSQLEAQN AHYQLDREQR KDHVNSLIAV LDKLADAMGR IADKL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 339 | 345 | GKKRKRG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791338.1 | 1e-180 | PREDICTED: uncharacterized protein LOC104238623 isoform X2 | ||||
Swissprot | Q8VZ20 | 2e-84 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A1U7XKC1 | 1e-179 | A0A1U7XKC1_NICSY; uncharacterized protein LOC104238623 isoform X2 | ||||
STRING | XP_009791337.1 | 1e-175 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1786 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-82 | Trihelix family protein |
Publications ? help Back to Top | |||
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