PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf17137g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 706aa    MW: 79394.9 Da    PI: 10.1272
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf17137g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.2e-101264248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                                W+t+E++ll+ avk++G ++W+++a +++        +t+  ck+++++++
  Niben101Scf17137g00006.1 12 TTWSTWEELLLAFAVKRHGLKDWESVAMELQsrsslpALLTAQICKDKYRDLR 64
                              68**********************************9889*********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-6571IPR009057Homeodomain-like
SuperFamilySSF466894.76E-7671IPR009057Homeodomain-like
PROSITE profilePS500906.713664IPR017877Myb-like domain
SMARTSM007172.7E-51066IPR001005SANT/Myb domain
PfamPF002491.4E-81163IPR001005SANT/Myb domain
CDDcd001673.37E-51463No hitNo description
SMARTSM002972.6E-14343448IPR001487Bromodomain
SuperFamilySSF473709.68E-19348445IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.6E-16350450IPR001487Bromodomain
CDDcd043692.44E-16350443No hitNo description
PfamPF004393.8E-11354433IPR001487Bromodomain
PROSITE profilePS5001412.775358429IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MEKEYGTTKK KTTWSTWEEL LLAFAVKRHG LKDWESVAME LQSRSSLPAL LTAQICKDKY  60
RDLRRRFINK NNGYDDEKFN DVIDDGVDGD GDVTIPWIEE LRQLRVAELK QEVQRYDLSI  120
QSLQLKVKKM EEEREQSLKE ESLDGGQKPD LEDVKEERSQ NDKNSSAEGT PEESIGKAVS  180
SEESDRENRS FNESNSTENR EIVVKNEQEP VETDEFRPVQ EVKPVSEEDS YNGSSSDRHE  240
EKKISRESGE SKEETKENSD VQSTATLTKK KRQRAVDGGR SGGDAVETGS PAVGHIKGEG  300
AAKSEPLVEF LDIIRSHKRG SMFKRRLDSQ TGSPVAGLNK GEGAVKSEPL VEFLDIIRSH  360
KRGSMFKRRL DSQKTDKYKN MIRRHMDLET VQARIDDGSY CSCPSKFYLD LLLIFHNAIV  420
YFPKSSPEST AANELRGIVM EELKKNRTQQ KHSSPGPGPL RIQPKPELER SDSLLARHKS  480
TAPIVVCRKR SSISSKAAAS GNIKPEKQAD IKPPLNPKPP IKSSSNEEES SIKLGMKEKP  540
VTGVRSMRRS NKGRPNNNAS QSNNNQTTNT KQTNTNSDKK EEAKIEKKKE EAKKRGAAAD  600
FLKRIKKNSP TKGTLMEALK NPTEDVVIKG NKREQQKKKV DKRIEAPVKR NGGSDGGGGK  660
DEGSPSKRSV GRPPKRGGKE TVQEKRGREN SEKDDTSKRP KKRSRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273KKKRQR
2697705KRPKKRSRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234441.10.0PREDICTED: DNA mismatch repair protein Msh3-like
TrEMBLA0A1J6K9L70.0A0A1J6K9L7_NICAT; Uncharacterized protein
STRINGXP_009793812.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.13e-85DNA-binding bromodomain-containing protein