PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf17127g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 267aa MW: 30617.3 Da PI: 6.8009 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 57 | 102 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++teE+e ++ ++ + G++ W++Ia++++ gRt++++k++w++yl Niben101Scf17127g00016.1 57 RGAFSTEEEETILTLHGMIGNK-WSLIAHHLP-GRTDNEIKNHWHSYL 102 89********************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.568 | 11 | 51 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.32E-23 | 14 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-5 | 15 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-13 | 17 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.122 | 52 | 106 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-15 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 57 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-25 | 59 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.98E-10 | 59 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MRCKPAVDKP KQKHKKGLWS PDEDQKLKDY IIKYGLKRNG KSCRLRWINY LRPGLKRGAF 60 STEEEETILT LHGMIGNKWS LIAHHLPGRT DNEIKNHWHS YLKKRVDKTA ESESQSQNID 120 GVFSSSLKLA SRNASLDSFA QTKGSLADTD QDVSPVDFLN EPFKSKIHKV LFAEWYSLDQ 180 FNGQHLDLPK NNLSYSKSES EDAFLNGLFI REGNYVNDIN IQGINNETVD NDMFQAQLKF 240 EDHLSTNGFE ELLSGDFNIN GDIMYIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 16 | 107 | 7 | 109 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770980.1 | 1e-166 | PREDICTED: transcription factor MYB46-like | ||||
Refseq | XP_016471228.1 | 1e-166 | PREDICTED: transcription repressor MYB6-like | ||||
TrEMBL | A0A1S4A3L1 | 1e-165 | A0A1S4A3L1_TOBAC; transcription repressor MYB6-like | ||||
TrEMBL | A0A1U7W9R4 | 1e-165 | A0A1U7W9R4_NICSY; transcription factor MYB46-like | ||||
STRING | XP_009770980.1 | 1e-165 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 5e-53 | myb domain protein 19 |