PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf17122g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 227aa MW: 26480.7 Da PI: 5.2955 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.6 | 5.7e-20 | 24 | 74 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le++F+++ ++ +++ eLA+ lgL+ rqV +WFqNrRa++k Niben101Scf17122g00007.1 24 RFTDEQVKLLESMFKQETKLEPRKKLELARDLGLQPRQVAIWFQNRRARWK 74 7*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.5 | 2.1e-39 | 23 | 112 | 4 | 93 |
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +r+++eqvklLE++F++e+kLep++K elar+Lglqprqva+WFqnrRAR+k+kq+E++y+ Lk+++d+l+ + ++L++e+e+L Niben101Scf17122g00007.1 23 KRFTDEQVKLLESMFKQETKLEPRKKLELARDLGLQPRQVAIWFQNRRARWKSKQMEHEYRLLKAEFDKLNMQFQSLKQEKESLL 107 8************************************************************************************ PP HD-ZIP_I/II 89 eelke 93 ++l+e Niben101Scf17122g00007.1 108 KQLEE 112 99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.82E-19 | 11 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.848 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-18 | 18 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.32E-15 | 24 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 24 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.1E-17 | 24 | 74 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 3.8E-6 | 47 | 56 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.8E-6 | 56 | 72 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.6E-12 | 76 | 117 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MEAEDTLTQG NTEPSNKKSK DGKRFTDEQV KLLESMFKQE TKLEPRKKLE LARDLGLQPR 60 QVAIWFQNRR ARWKSKQMEH EYRLLKAEFD KLNMQFQSLK QEKESLLKQL EELNDQLENN 120 HAGCIKGQDS LDSEIYTCSE NGGTDLELKD NNIPGCLNAS LVDKRVKEVE NDREGRLIEH 180 FRWKEEPEFW NIKELGDSSL GSPGHWCAVG LGRTFDLSCG NSKWWEF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 76 | RRARWKSKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019234402.1 | 1e-156 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A1J6KVH9 | 1e-155 | A0A1J6KVH9_NICAT; Homeobox-leucine zipper protein athb-12 | ||||
STRING | XP_009803292.1 | 1e-153 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 8e-35 | homeobox 7 |