PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf17051g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 297aa    MW: 32892.1 Da    PI: 4.2633
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf17051g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-192069255
                       AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +y GVr+++ +grWvAeI d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Niben101Scf17051g00007.1 20 RYVGVRQRP-SGRWVAEINDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 69
                              69*******.7*******9933....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-342083IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-192077IPR016177DNA-binding domain
PROSITE profilePS5103219.6782077IPR001471AP2/ERF domain
CDDcd000188.89E-322076No hitNo description
PfamPF008471.4E-142069IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-282076IPR001471AP2/ERF domain
PRINTSPR003671.1E-82132IPR001471AP2/ERF domain
PRINTSPR003671.1E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVKETDGAAT QSGVQRARNR YVGVRQRPSG RWVAEINDTI QKIRVWLGTF DTAEEAARAY  60
DEAACLLRGA NTRTNFWPCS LSNSSSASAL SPKISNILLA RLKEKNNSVA SAAADDSSKS  120
CSVPEIGRQQ LNHQEKIGED VSNFSDSLYA DYLNYPDDHI TGSNTIANVS ATTTDFSSWA  180
DFIQPVNNFQ SSNGEIIEVG NKEEEIGEAS NTDVLEDIES NIDFQFLDEI GSSYYSPFEI  240
AEELSSETME HGMVYGEETS VVSEAMRRMN YERTFSASLY AFNGITECLK FKMKFGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-141376771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769291.10.0PREDICTED: ethylene-responsive transcription factor ERF013-like
RefseqXP_016438801.10.0PREDICTED: ethylene-responsive transcription factor ERF013-like
TrEMBLA0A1S3XFN80.0A0A1S3XFN8_TOBAC; ethylene-responsive transcription factor ERF013-like
TrEMBLA0A1U7VWG00.0A0A1U7VWG0_NICSY; ethylene-responsive transcription factor ERF013-like
STRINGXP_009769291.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-21related to AP2 11