PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf16981g02005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 410aa MW: 44589.6 Da PI: 8.3503

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf16981g02005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.7e-05	300	338	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Niben101Scf16981g02005.1 300 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 338 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.134	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.06E-10	298	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.36E-5	298	342	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.3E-9	302	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MEPANLHHHH QQYHQLQFQD QPPLGISPNS SSSNSIYGVA TNTTHTWTPY TILDSVGTSL 60 SSYSSGAINA TNSSDPLLLR QQQQSGTNLV SMTQDLGFHW ANNSVSCQLV KQENSLDSYP 120 RLTQMLKSPS NIEERELSDM NAKLFFGSLS NAGCQMINTG LQLYPGDHNL VYSSNSSIST 180 NNRGKFSQIY PTSNVSNLNT INQTSYLANS SSLDMNLQPL DLVNSSRYGG SFSQPYGLTN 240 HFQHSSSESP VDSSSSISAF SNGVPEAKRT SNILEPKAPQ NAPKKSRVDA RASCPPFKVR 300 KEKLGDRIAA LQQLVAPFGK TDTASVLMEA IGYIKFLQSQ VETLSVPYMK SSRNKTSRSL 360 HGGGGEMKGS EEVKRDLRSR GLCLVPLSCL TYMTDGCGGV WPPPNFAGGT

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MEPANLHHHH QQYHQLQFQD QPPLGISPNS SSSNSIYGVA TNTTHTWTPY TILDSVGTSL  60
SSYSSGAINA TNSSDPLLLR QQQQSGTNLV SMTQDLGFHW ANNSVSCQLV KQENSLDSYP  120
RLTQMLKSPS NIEERELSDM NAKLFFGSLS NAGCQMINTG LQLYPGDHNL VYSSNSSIST  180
NNRGKFSQIY PTSNVSNLNT INQTSYLANS SSLDMNLQPL DLVNSSRYGG SFSQPYGLTN  240
HFQHSSSESP VDSSSSISAF SNGVPEAKRT SNILEPKAPQ NAPKKSRVDA RASCPPFKVR  300
KEKLGDRIAA LQQLVAPFGK TDTASVLMEA IGYIKFLQSQ VETLSVPYMK SSRNKTSRSL  360
HGGGGEMKGS EEVKRDLRSR GLCLVPLSCL TYMTDGCGGV WPPPNFAGGT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009790800.1	0.0	PREDICTED: transcription factor bHLH110
Refseq	XP_016468176.1	0.0	PREDICTED: transcription factor bHLH110-like
TrEMBL	A0A1S3ZUV2	0.0	A0A1S3ZUV2_TOBAC; transcription factor bHLH110-like
TrEMBL	A0A1U7XWC3	0.0	A0A1U7XWC3_NICSY; transcription factor bHLH110
STRING	XP_009790800.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7533	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	3e-63	bHLH family protein