PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf16806g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family RAV
Protein Properties Length: 330aa    MW: 37879.1 Da    PI: 9.3719
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf16806g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.4e-132977155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              s++kGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  Niben101Scf16806g00003.1 29 SRFKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNDEDEAAKAYDIAAQRFRG 77
                              689***9788.8*********3.....5**********99*************98 PP
2B3992.9e-31159248188
                               EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                               f+k+ tpsdv+k++rlv+pk++ae++   + ++ +++ l led +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD v F
  Niben101Scf16806g00003.1 159 FEKTVTPSDVGKLNRLVIPKQHAERYfplE-NNSKGMLLNLEDMNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDAVSF 242
                               99*************************964.45689************************************************* PP

                               EE-SSS CS
                        B3  83 kldgrs 88 
                                +++  
  Niben101Scf16806g00003.1 243 GRSNGV 248
                               976544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.44E-242984No hitNo description
SuperFamilySSF541711.11E-162985IPR016177DNA-binding domain
PfamPF008473.9E-72977IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-193085IPR001471AP2/ERF domain
SMARTSM003804.8E-273091IPR001471AP2/ERF domain
PROSITE profilePS5103219.523085IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.7E-40152258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-32157247IPR015300DNA-binding pseudobarrel domain
CDDcd100176.08E-28158242No hitNo description
SMARTSM010192.7E-23159258IPR003340B3 DNA binding domain
PfamPF023621.6E-28159252IPR003340B3 DNA binding domain
PROSITE profilePS5086315.143159258IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGSGTSSVII DTELNCSIEA ESNKKLPSSR FKGVVPQPNG RWGAQIYEKH QRIWLGTFND  60
EDEAAKAYDI AAQRFRGKDA VTNFKPLYDS EKEEIEISFL NSRSKAEIVD MLRKHTYNDE  120
LEHSKKVYSF DKNDKRGCEN ALVTSFDVEN MSKARELMFE KTVTPSDVGK LNRLVIPKQH  180
AERYFPLENN SKGMLLNLED MNGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLKAGDAV  240
SFGRSNGVDK QLYIDSKARI FSTPVLDKIQ VEVQPVKMMR LFGVNICKVQ DVNNVVTENN  300
MSSCSGGKRM REMELLAFEC RKKQRVIDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-5415625911117DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789826.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-130RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A1U7XJN30.0A0A1U7XJN3_NICSY; AP2/ERF and B3 domain-containing transcription repressor RAV2-like
STRINGXP_009789826.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29582453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-132related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]