PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf16660g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 292aa    MW: 32204 Da    PI: 8.4722
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf16660g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09956347
                              SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                               W+ eE++ + +a++ +  +    +W +Ia++++  +t  ++k ++q +
  Niben101Scf16660g01003.1  9 MWSREEEKAFENAIAIHWIEdsklQWQKIASMVP-SKTIQELKQHYQLL 56
                              5*****************99**************.***********965 PP
2Myb_DNA-binding35.72e-11131175347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+  ++ +  ++G+g+W++I+r     Rt+ q+ s+ qky
  Niben101Scf16660g01003.1 131 PWTEEEHRFFLLGLDKFGKGDWRSISRNYVISRTPTQVASHAQKY 175
                               7*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.763560IPR017884SANT domain
SMARTSM007172.8E-4659IPR001005SANT/Myb domain
CDDcd001672.13E-81057No hitNo description
PfamPF002491.8E-61055IPR001005SANT/Myb domain
SuperFamilySSF466893.66E-91063IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-41056IPR009057Homeodomain-like
PROSITE profilePS5129417.264124180IPR017930Myb domain
SuperFamilySSF466891.66E-16126181IPR009057Homeodomain-like
SMARTSM007171.9E-9128178IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.1E-17128178IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.0E-10129174IPR009057Homeodomain-like
CDDcd001673.86E-9131176No hitNo description
PfamPF002494.3E-10131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSTSTSPLMW SREEEKAFEN AIAIHWIEDS KLQWQKIASM VPSKTIQELK QHYQLLVDDV  60
TAIEAGNVPI PIYTEEEASS SAKDSSHGYS GISNGRSFCS YVNGFSGSVH EIGQGGKGSS  120
KSENERRKGI PWTEEEHRFF LLGLDKFGKG DWRSISRNYV ISRTPTQVAS HAQKYFIRLN  180
SMNRDRRRSS IHDITSVNNG EVATNQTPIT GKQTNTSPSN AAEPSVGQRN QPNMHGLSMY  240
GAPMGHPVAA PPGHHVSAVG TPVMLPPGHH PPYVLPAGYH MPPHPLPPMH HQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019265953.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN69e-80SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A314L2D00.0A0A314L2D0_NICAT; Transcription factor myb1r1
STRINGXP_009762003.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58012136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-90MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]