PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf16592g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 304aa    MW: 34370.1 Da    PI: 5.2444
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf16592g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.9e-111454146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                              +g W++eEde+l ++++++G g+W+++++        +++k++w++
  Niben101Scf16592g00005.1 14 KGLWSPEEDEKLCNYITKFGVGSWSSVPKLAD-----NEIKNFWNS 54
                              678************************99999.....*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-16761IPR009057Homeodomain-like
SuperFamilySSF466892.99E-11866IPR009057Homeodomain-like
PROSITE profilePS5129416.66960IPR017930Myb domain
SMARTSM007177.6E-71358IPR001005SANT/Myb domain
PfamPF002494.5E-81454IPR001005SANT/Myb domain
CDDcd001679.17E-71756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRHSSCVKQ KLRKGLWSPE EDEKLCNYIT KFGVGSWSSV PKLADNEIKN FWNSSLKKKL  60
IKQGIDPNTH KPLSENQVKD EENCTNKSSM LQIPSAGLVD QPFHLTNIRS FDSEVNGQLT  120
EASKDQFESN QVFDLLFIHE FQANVKPNPS GYNSEVLAQF QQNMRANDHS QSEFERNPNY  180
GFCSETSLTK LEHGQTIENN FGSSSTSRMS SRNSSSVCRY QNSAEIQMTG MLENSEALSW  240
EVENKIGSLI QYPFISIKNE ELKSSPRQER ELYGHSSGDI LTNYPLSSLT EELSGATLDV  300
FQQI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772158.11e-163PREDICTED: transcription repressor MYB4-like
TrEMBLA0A1U7W0M91e-162A0A1U7W0M9_NICSY; transcription repressor MYB4-like
STRINGXP_009772158.11e-162(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-24myb domain protein 86