PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf16585g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 203aa    MW: 21828.7 Da    PI: 5.603
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf16585g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.5e-06447542
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                               C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Niben101Scf16585g02003.1  4 QCNVCEVAEANVLCCADEAALCWSCDEKVHAAnklaskHQRVPL 47
                              7*****999*********************66899999999986 PP
2zf-B_box28.92.4e-095390237
                  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                              +++kC+ ++e    +fC +++ llC++C  ++H    H
  Niben101Scf16585g02003.1 53 SMPKCDICQESVGYFFCLEDRALLCRKCDIAIHTAnpH 90
                              689*******99********************955663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.594147IPR000315B-box-type zinc finger
CDDcd000212.32E-7347No hitNo description
SMARTSM003362.8E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1015299IPR000315B-box-type zinc finger
SMARTSM003363.3E-165299IPR000315B-box-type zinc finger
PfamPF006432.4E-75395IPR000315B-box-type zinc finger
CDDcd000214.16E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MKIQCNVCEV AEANVLCCAD EAALCWSCDE KVHAANKLAS KHQRVPLSGS SSSMPKCDIC  60
QESVGYFFCL EDRALLCRKC DIAIHTANPH VSTHQRFLLT GVKVGLEPID PGGASSSGTS  120
QSIQKVSEPE SAPLSKRNAP ISLDAQFDKV LPPRASALGE FAPSRSPYAG GSAAGSIPQW  180
KFDEYIGLND FNQNYGYMDD AII
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762543.11e-142PREDICTED: probable salt tolerance-like protein At1g78600
RefseqXP_016483077.11e-142PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM21e-79BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1S4B2C11e-140A0A1S4B2C1_TOBAC; B-box zinc finger protein 22-like
TrEMBLA0A1U7V8431e-140A0A1U7V843_NICSY; probable salt tolerance-like protein At1g78600
STRINGXP_009762543.11e-141(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.25e-82light-regulated zinc finger protein 1