PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf16127g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 490aa MW: 51367.9 Da PI: 7.892 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.6e-12 | 49 | 73 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H+p Niben101Scf16127g00005.1 49 EADCIYYLRTGFCGYGSRCRFNHPP 73 689********************97 PP | |||||||
2 | zf-CCCH | 33.7 | 6.3e-11 | 99 | 123 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+ ++Ck++H++ Niben101Scf16127g00005.1 99 QPVCQYYMRTGMCKFVASCKYHHPR 123 689********************96 PP | |||||||
3 | zf-CCCH | 35.9 | 1.2e-11 | 144 | 169 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f+++tG+Ck+G +CkF+H++ Niben101Scf16127g00005.1 144 GEKECLFYMKTGQCKFGITCKFHHPQ 169 7899********************97 PP | |||||||
4 | zf-CCCH | 35.8 | 1.4e-11 | 314 | 340 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G Ck+G++C+++H+p Niben101Scf16127g00005.1 314 PGQPECQYYMKYGDCKFGSSCRYHHPP 340 5789*********************97 PP | |||||||
5 | zf-CCCH | 35.4 | 1.9e-11 | 362 | 386 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C++++++G Ck+G++CkF H++ Niben101Scf16127g00005.1 362 APICSHYSQNGVCKFGPSCKFDHPM 386 589********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.709 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-6 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 49 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-10 | 49 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-5 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-7 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 101 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-5 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.446 | 142 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-6 | 144 | 170 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-9 | 144 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-6 | 313 | 340 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.464 | 313 | 341 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-9 | 315 | 340 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 317 | 340 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-6 | 357 | 385 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-6 | 359 | 386 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.145 | 360 | 387 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 362 | 386 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-5 | 364 | 384 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MERYSATQAM EGAPVSEWTS PGGDTGLEEA MWQLSVGSGP ESYPERPNEA DCIYYLRTGF 60 CGYGSRCRFN HPPDRNLVMG AAKAIGGGGE GEYPERVGQP VCQYYMRTGM CKFVASCKYH 120 HPRQGGGSPA LMTHNIFGYP LRPGEKECLF YMKTGQCKFG ITCKFHHPQP AGVQVPASAA 180 RPGPFPLPAA VPPPAAYPAV QSPSVQSAQQ YGVIAGNWPV VRPTLLPGSY LPGTYGPMLL 240 PPGMVPVPGW TPYPASASQV PSLTTQPAAG AGPVYGLTQL SASAPSYMGL YASLTASIGP 300 SGSIQKEHAF PEKPGQPECQ YYMKYGDCKF GSSCRYHHPP EWSGPKSGFI LSAMGLPLHP 360 GAPICSHYSQ NGVCKFGPSC KFDHPMGISY SPSASSLVDM PVAPYPVGSS VCILAPSSSS 420 DLKPELVSGS TKDAFSTQTS SMSTSSGSVG SMFSKGGPVS HSGAQQSIQS STSSSGSSST 480 GRDGEAQTSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019267357.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2 | ||||
Swissprot | Q84W91 | 1e-157 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A314KY39 | 0.0 | A0A314KY39_NICAT; Zinc finger ccch domain-containing protein 32 | ||||
STRING | XP_009802825.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2412 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-128 | C3H family protein |