PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf16007g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 219aa    MW: 24463.5 Da    PI: 4.8922
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf16007g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-1658108155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               + y+GVr +  + +Wv+e+r+p   +k+ r++lg+f +ae+Aa+a++ a+ +l+g
  Niben101Scf16007g00010.1  58 PVYRGVRKRN-SDKWVCEVREP---NKKSRIWLGTFPSAEMAARAHDVAAIALKG 108
                               68*****888.7******9998...347***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-1258108IPR001471AP2/ERF domain
SMARTSM003808.4E-2859122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3059118IPR001471AP2/ERF domain
PROSITE profilePS5103221.4759116IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2059118IPR016177DNA-binding domain
CDDcd000188.22E-3060118No hitNo description
PRINTSPR003671.3E-76071IPR001471AP2/ERF domain
PRINTSPR003671.3E-78298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDIFRSYYSD PLAECSSISD SSSSSCNRAN LSDEEVILAS NNPKKRAGRK KFRETRHPVY  60
RGVRKRNSDK WVCEVREPNK KSRIWLGTFP SAEMAARAHD VAAIALKGRS ACLNFADSAW  120
KLPIPASTDA KDIQKAAAEA AEAFRSSEAE NMPEYSGEDT KEVNSTPENM FYMDEEALFC  180
MPGLLANMAE GLMLPPPQCS QIGDHMEDDF DMPLWSYSI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312746.11e-141dehydration-responsive element-binding protein 1D-like
SwissprotQ9FJ932e-74DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLQ4A4931e-161Q4A493_FESAR; Avirulence-like protein 1
STRINGXP_009781787.11e-140(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.12e-72dehydration response element B1A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]