PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15963g01004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 148aa    MW: 16368.4 Da    PI: 8.1998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15963g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-171666155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              ++y+G+r++k +g+Wv+eIr+p   g +  r +lg++ t+e Aa a++ a  +l+ 
  Niben101Scf15963g01004.1 16 KKYRGIRRRK-WGKWVSEIRVP---G-SsERLWLGTYTTPEAAAFAHDIAYYCLRE 66
                              59*****998.**********8...4.34***********************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.03E-241676No hitNo description
Gene3DG3DSA:3.30.730.102.7E-251776IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-171777IPR016177DNA-binding domain
PfamPF008471.2E-81765IPR001471AP2/ERF domain
SMARTSM003807.3E-241782IPR001471AP2/ERF domain
PROSITE profilePS5103221.4831776IPR001471AP2/ERF domain
PRINTSPR003672.9E-91829IPR001471AP2/ERF domain
PRINTSPR003672.9E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSSSDEGGSS TSAQQKKYRG IRRRKWGKWV SEIRVPGSSE RLWLGTYTTP EAAAFAHDIA  60
YYCLRESSSL DKLNFPFMLP VNVERGMSPR SVQKVASDAG MAIDAKLVTG YPTVKGGQQE  120
MNIGHVCQNV DNHGQSEALS ISVEDYLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-16576272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767328.11e-104PREDICTED: ethylene-responsive transcription factor ERF020-like
RefseqXP_016443781.11e-104PREDICTED: ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I88e-44ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A1S3XV091e-102A0A1S3XV09_TOBAC; ethylene-responsive transcription factor ERF020-like
TrEMBLA0A1U7VLT91e-102A0A1U7VLT9_NICSY; ethylene-responsive transcription factor ERF020-like
STRINGXP_009767328.11e-103(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94942028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.17e-46ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]