PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15962g00025.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 308aa    MW: 34394 Da    PI: 10.118
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15962g00025.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.1e-202777256
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  Niben101Scf15962g00025.1 27 KFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 77
                              799******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-302784No hitNo description
Gene3DG3DSA:3.30.730.103.5E-272784IPR001471AP2/ERF domain
PROSITE profilePS5103219.9812784IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-192784IPR016177DNA-binding domain
SMARTSM003806.3E-342790IPR001471AP2/ERF domain
PfamPF008472.7E-152777IPR001471AP2/ERF domain
PRINTSPR003673.1E-72839IPR001471AP2/ERF domain
PRINTSPR003673.1E-75066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAGTETTKTN TNTTKSSPEP NKSISRKFVG VRQRPSGRWV AEIKDSSQRV RLWLGTYDTP  60
EEAARAYDEA ARALRGENAR TSFASNTLSN PNSNHDQSIN MLQSNDSKHG LSFSSLKAKL  120
SKNLHSIMAR NSENKSSASK NRVSDHFTFA RIFHFKNNCH QYQSQHMGMK KIEKVVQPSI  180
RVLPHVTDNN NNNDLSSWEN SSVSDCSSEW AAFRQLGLDS DNGSSDASEY FLGSDPMAGW  240
VSSPDIMSSS SEGSRSKRFK VSSSVMVPPT FSVLLINSSV AEVDRESRKN NRKQKTWLEN  300
NHVVFYVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1327831471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229180.11e-162PREDICTED: ethylene-responsive transcription factor ERF010-like
TrEMBLA0A314KLN41e-160A0A314KLN4_NICAT; Ethylene-responsive transcription factor rap2-11
STRINGXP_009598443.11e-149(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125641721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-16related to AP2 11