PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf15836g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 811aa MW: 90341.7 Da PI: 6.5531 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74 | 1.8e-23 | 166 | 267 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD Niben101Scf15836g00006.1 166 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDA 249 99****************************86333.45679******************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 v+F + +++ l+++++r+ Niben101Scf15836g00006.1 250 VLFL--RGEGGDLRLGIRRA 267 ****..4489999**99986 PP | |||||||
2 | Auxin_resp | 114.7 | 8.2e-38 | 292 | 373 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s ks+F+v+Y+Pras+++Fvv+++k++k++++++ v +Rfkm+f+ +ds+err+sG+v+g+sd+dp+rWpnSkWr+L Niben101Scf15836g00006.1 292 VATAVSAKSTFHVFYSPRASHADFVVPYQKYMKSINSRIPVRTRFKMRFDLDDSPERRYSGVVTGISDMDPFRWPNSKWRCL 373 6899*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.27E-44 | 158 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-40 | 159 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.84E-22 | 164 | 266 | No hit | No description |
PROSITE profile | PS50863 | 12.901 | 166 | 268 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-21 | 166 | 267 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-23 | 166 | 268 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-31 | 293 | 373 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.13E-10 | 665 | 751 | No hit | No description |
Pfam | PF02309 | 2.6E-6 | 666 | 756 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 21.772 | 672 | 756 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 811 aa Download sequence Send to blast |
MEIDLNHAVV SEVEKNACYN GECDKSGVGG SCVNCNLSTT STSSCSSNAS SSSSSLTLSS 60 IYMELWHACA GPLTSLPKKG NVVVYFPQGH MEEAVSVSPF SPIKMDFPTF GLQPQIFCKV 120 EDVQLLANKE NDESVAISLK EKEHENLGVD EEGNGVNPGK SASHMFCKTL TASDTSTHGG 180 FSVPRRAAED CFPPLDYKEQ RPSQELIAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVS 240 QKNLVSGDAV LFLRGEGGDL RLGIRRAARP RNGLPESIIK AQYSGSDVLS AVATAVSAKS 300 TFHVFYSPRA SHADFVVPYQ KYMKSINSRI PVRTRFKMRF DLDDSPERRY SGVVTGISDM 360 DPFRWPNSKW RCLMVRWDED IMSNHQERVS PWEIDSSVSL PPLSIQSPRL KKLRTSQQAP 420 SLDSHFAGGS ALLDFEESVR SSKVLQGQEN LGLISPPYGC DKTVRPLDFE LQNVARHNLM 480 PTGMENIIVG DFVKTQPPTT YTGFLESNRF PKVLQGQEIC SLRSLTGKSD VNFGAWGKPE 540 FGCNVFSTYQ RPKANFYPLA SEGARNVFLP YNAMYRAGQD PVVHSYINYN FQRENPTLNQ 600 NSIQNGVRRE EGGMQKFANE QSPLEMSKLS IPETNFKNEN SGSLNAQASC KLFGFSLIKE 660 PSTPSSQSSG KRSCTKVHKQ GSLVGRAIDL SRLNGYEDLL GELERLFNME DLLRDPNKGW 720 RILYTDSEND MMVVGDDPWH EFCEVVSKIH IYTQEEVEKM TIEGISDDTR SCLEEAPPAF 780 MDASKSSSVG QPDSSPTMMA IKSINFPEHL R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-110 | 45 | 395 | 2 | 353 | Auxin response factor 1 |
4ldw_A | 1e-110 | 45 | 395 | 2 | 353 | Auxin response factor 1 |
4ldw_B | 1e-110 | 45 | 395 | 2 | 353 | Auxin response factor 1 |
4ldx_A | 1e-110 | 46 | 395 | 3 | 353 | Auxin response factor 1 |
4ldx_B | 1e-110 | 46 | 395 | 3 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019229596.1 | 0.0 | PREDICTED: auxin response factor 4 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A314KL44 | 0.0 | A0A314KL44_NICAT; Auxin response factor | ||||
STRING | XP_009779766.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5143 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |