PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15817g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 329aa    MW: 37356.8 Da    PI: 7.0591
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15817g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-181462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd +l+ +++q+G+g +W t ++++g++R++k+c++rw++yl
  Niben101Scf15817g02001.1 14 RGPWSPEEDAKLKSYIQQHGTGgNWITLPQKVGLKRCGKSCRLRWLNYL 62
                              89*********************************************97 PP
2Myb_DNA-binding37.36.5e-1269111246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g +T++Ed ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Niben101Scf15817g02001.1  69 GEFTEQEDNIICSLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                               78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.811962IPR017930Myb domain
SuperFamilySSF466894.9E-2711109IPR009057Homeodomain-like
SMARTSM007178.9E-131364IPR001005SANT/Myb domain
PfamPF002494.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-251569IPR009057Homeodomain-like
CDDcd001678.52E-101662No hitNo description
PROSITE profilePS5129421.35863117IPR017930Myb domain
SMARTSM007175.1E-1167115IPR001005SANT/Myb domain
PfamPF002491.1E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2370117IPR009057Homeodomain-like
CDDcd001672.12E-770111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIQ QHGTGGNWIT LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTEQEDNIIC SLYLSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
QRKDHRPRTG YLHNNKLDMM KENENFFSSI PDISAYYSWP PQPLLFSTVI APHENDLAES  180
SANFQYSPDQ VYYSQDQLCQ SSTNQLVASS ASMNPLNMNT CDSPVISSYY SSNINGVINS  240
FQEYNNYVPV GLNDVLSCTT SHSQQIDKSA LEMVNSRTIS TTSPDDSTSW EELSPLIVYP  300
PSVSNSETQQ EISPYYVFEE SRYLGLIKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790050.10.0PREDICTED: transcription factor RAX3-like
TrEMBLA0A1U7XU880.0A0A1U7XU88_NICSY; transcription factor RAX3-like
STRINGXP_009790050.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-76myb domain protein 84