PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15739g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 188aa    MW: 22061.1 Da    PI: 10.9047
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15739g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-152067148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd +l+ ++ ++G  +W+  +r  g+ Rt+k+c++rw +yl
  Niben101Scf15739g00010.1 20 KGAWSPEEDHKLISYIMRYGIWNWSHMPRFAGLSRTGKSCRLRWMNYL 67
                              79******************99************************97 PP

2Myb_DNA-binding42.81.2e-1373118148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++ eE e  ++  ++lG++ W+ Ia++++ gRt++++k++++++l
  Niben101Scf15739g00010.1  73 RGPFSIEERETVIKTYQELGNR-WSEIAARLP-GRTDNEVKNFFHTHL 118
                               89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2931567IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-221570IPR009057Homeodomain-like
SuperFamilySSF466891.49E-2818114IPR009057Homeodomain-like
SMARTSM007174.2E-111969IPR001005SANT/Myb domain
PfamPF002499.8E-142067IPR001005SANT/Myb domain
CDDcd001671.45E-82267No hitNo description
PROSITE profilePS5129421.61668122IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-2471122IPR009057Homeodomain-like
SMARTSM007171.4E-1172120IPR001005SANT/Myb domain
PfamPF002493.1E-1273118IPR001005SANT/Myb domain
CDDcd001671.20E-775118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MPRVPPQQQQ KSTNMEEIKK GAWSPEEDHK LISYIMRYGI WNWSHMPRFA GLSRTGKSCR  60
LRWMNYLRPD VKRGPFSIEE RETVIKTYQE LGNRWSEIAA RLPGRTDNEV KNFFHTHLKK  120
HLRVKNDAPS KTKARSNKRE VKKTKGNERT NADKRSPDVS SSDRSSIITF EVNQMMDVTM  180
NSTQNVPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-251712024126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244719.11e-123PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX82e-49MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A1J6J4Q51e-122A0A1J6J4Q5_NICAT; Myb-related protein myb4
STRINGXP_009798928.11e-117(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-49myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]