PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15739g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 193aa    MW: 22527.9 Da    PI: 10.3062
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15739g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-077322348
                              -HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                              +W+  ++  g+ Rt+k+c++rw +yl
  Niben101Scf15739g00009.1  7 NWSHMPKFAGLSRTGKSCRLRWMNYL 32
                              8***********************97 PP
2Myb_DNA-binding38.82.1e-123883148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g++T eE e  ++  ++lG++ W++Ia++++ gRt++++k +++++l
  Niben101Scf15739g00009.1 38 KGPFTMEERETTIKMYQELGSR-WSAIAAKLP-GRTDNDVKTFFYTHL 83
                              79********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.307132IPR017930Myb domain
CDDcd001670.00836232No hitNo description
Gene3DG3DSA:1.10.10.604.2E-13238IPR009057Homeodomain-like
SuperFamilySSF466893.17E-211888IPR009057Homeodomain-like
PROSITE profilePS5129415.533387IPR017930Myb domain
SMARTSM007171.6E-103785IPR001005SANT/Myb domain
PfamPF002497.9E-113883IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-223987IPR009057Homeodomain-like
CDDcd001671.45E-74083No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MRYGIWNWSH MPKFAGLSRT GKSCRLRWMN YLQPDVKKGP FTMEERETTI KMYQELGSRW  60
SAIAAKLPGR TDNDVKTFFY THLKKHMGMK NVALLKSNAR RKRVEKTKKA QERPVLFVAI  120
NNLTTGTSCS SSNSIITFLE NQKMNIDMEN TVILESNLET YQSDHSLRIE SLDQFDTSSF  180
WFHLLNDAHR LIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A6e-16411121131MYB3
3zqc_D6e-16411121131MYB3
3zqc_G6e-16411121131MYB3
3zqc_J6e-16411121131MYB3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244720.11e-125PREDICTED: myb-related protein Myb4-like
SwissprotQ9LTC44e-34MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A1J6JCR01e-123A0A1J6JCR0_NICAT; Myb-related protein myb4
STRINGXP_009790938.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-36myb domain protein 14
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]