PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15704g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 266aa    MW: 29710 Da    PI: 7.849
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15704g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.78.1e-15103146956
                       AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               + ++g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Niben101Scf15704g00006.1 103 R-NWGKWVSEIREPKK---KSRIWLGTYSTAEMAARAHDVAALAIKGH 146
                               4.5**********854...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.66495153IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18102154IPR016177DNA-binding domain
SMARTSM003802.3E-28102159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-26103153IPR001471AP2/ERF domain
CDDcd000189.93E-29103155No hitNo description
PfamPF008473.7E-9103146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKDLEEQINL KTSAHNHDLS TSFSSSNSLN FPSTITTSSS LSSSSSFLKN NTKISIEYKV  60
KKISKEVQEF NYKANDHIGG TDETERERKK RTMTSTRHIE EFRNWGKWVS EIREPKKKSR  120
IWLGTYSTAE MAARAHDVAA LAIKGHSAHL NFPYLADQLP RPASTSSKDI QIATAKAAAT  180
TFSEEMKSRP ESSHEISSPI EQQSSCSSTD LSTDNDDTFF NLPDLSINKV DLMGRYSDPI  240
STWQLVGADR FKGVTVVSLT IGYGHF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261765.11e-126PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ76e-42ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A314L9K71e-124A0A314L9K7_NICAT; Ethylene-responsive transcription factor erf034
STRINGXP_009628141.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.15e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]