PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15536g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 298aa    MW: 34428.1 Da    PI: 8.9448
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15536g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.6e-151461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W+  Ed+ll +++k+ G g+W++ ++  g+ R++k+c++rw +yl
  Niben101Scf15536g01001.1 14 KGPWSSKEDLLLTNYIKENGEGQWRSLPKNAGLLRCGKSCRLRWMNYL 61
                              79******************************99************97 PP
2Myb_DNA-binding50.54.8e-1667112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++ ++Ed+l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
  Niben101Scf15536g01001.1  67 RGNFCQDEDDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                               78999*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-21563IPR009057Homeodomain-like
PROSITE profilePS5129415.11961IPR017930Myb domain
SuperFamilySSF466896.64E-2811108IPR009057Homeodomain-like
SMARTSM007174.6E-111363IPR001005SANT/Myb domain
PfamPF002494.1E-131461IPR001005SANT/Myb domain
CDDcd001671.73E-71661No hitNo description
PROSITE profilePS5129424.81962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-2564117IPR009057Homeodomain-like
SMARTSM007175.9E-1466114IPR001005SANT/Myb domain
PfamPF002493.0E-1467112IPR001005SANT/Myb domain
CDDcd001671.12E-972112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVRKPCCVKE GLRKGPWSSK EDLLLTNYIK ENGEGQWRSL PKNAGLLRCG KSCRLRWMNY  60
LRPGIKRGNF CQDEDDLIVR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLIKKLKSVG  120
IEPNPHKNFS KYSKKESRKG PQQEKSRKLQ GKKSNNKNNK GQIVQVEKTK VFAPKPIRIF  180
CGISRNNSFE NVTLSTTCSS NSNSEEANLE NKENEVKLEE VSFFPRDLDF GKLLEGDAIY  240
DEFLIEESCH ISNKCSLPMN ESMLEKVYEE YLLLLSENCY LQNDNQKEQN FPVNDSDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25121185110B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432631.10.0PREDICTED: transcription factor MYB3-like
TrEMBLA0A1S3WYM30.0A0A1S3WYM3_TOBAC; transcription factor MYB3-like
STRINGXP_009602702.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-64myb domain protein 5