PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf15373g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 397aa MW: 44242.7 Da PI: 5.8755 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 9.1e-08 | 340 | 373 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Niben101Scf15373g00012.1 340 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 373 469*****************************87 PP | |||||||
2 | ELK | 28.9 | 2.5e-10 | 294 | 315 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Niben101Scf15373g00012.1 294 ELKHELKQGYKEKIVDIREEIL 315 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.1E-19 | 128 | 172 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.5E-17 | 130 | 171 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.4E-25 | 181 | 237 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.2E-18 | 187 | 236 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 294 | 314 | IPR005539 | ELK domain |
Pfam | PF03789 | 9.1E-7 | 294 | 315 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 294 | 315 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 314 | 377 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-11 | 316 | 381 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-16 | 316 | 380 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.24E-11 | 317 | 378 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 321 | 378 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 334 | 373 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MAFQDHFSQE MATLHQQQQN AAVLRSMLPE DHQSPRKSPP TWLNTSLLRQ HSSAAAVSAA 60 GGTGNNFLHL QTSNSDSSNS NNQWLSPTAA ASAGGGGGAE EHNDVNINNN NSNSNNNNEE 120 GENSWEREKC KADILNHPLY DQLLSAHVSC LRIATPVDQL PRIDAQLAQS QNVVAKYSVF 180 GQGQPPLDDK DLDQFMTHYV LLLSSFKEQL QQHVRVHAME AVMACWELEQ SLQSLTGVAP 240 GEGTGATMSD DDDDQADSDT NFLDGGFDGS DSMGFGPLVP TESERSLMER VRQELKHELK 300 QGYKEKIVDI REEILRKRRA GKLPGDTTSV LKAWWQSHSK WPYPTEEDKA RLVQETGLQL 360 KQINNWFINQ RKRNWHSNPS TSTSQKSKRK SAGEIKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019256025.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like LET12 isoform X2 | ||||
Swissprot | O22300 | 0.0 | LET12_SOLLC; Homeobox protein knotted-1-like LET12 | ||||
TrEMBL | A0A1J6IDZ7 | 0.0 | A0A1J6IDZ7_NICAT; Homeobox protein knotted-1-like let12 | ||||
STRING | XP_009622162.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1432 | 24 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-144 | KNOTTED1-like homeobox gene 3 |