PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15244g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 1736aa    MW: 190282 Da    PI: 6.6765
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15244g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.5e-10813854346
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +WT+eE e+++d  + +G++ +++Ia+ +  ++t  +c+++++k
  Niben101Scf15244g00004.1 813 PWTPEETEIFIDKLATFGKD-FRKIASFLD-HKTTADCIEFYYK 854
                               8*****************99.*********.***********98 PP
2Myb_DNA-binding31.93.1e-1010431083345
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                                 WT eE  ++++av  +G++ +  I+r++  +R++++ck ++ 
  Niben101Scf15244g00004.1 1043 DWTDEEKSIFIQAVSAYGKD-FVMISRCVR-TRSREHCKIFFS 1083
                                5*****************99.*********.********8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.09E-14796857IPR009057Homeodomain-like
PROSITE profilePS5129316.617809860IPR017884SANT domain
SMARTSM007171.7E-10810858IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-6812857IPR009057Homeodomain-like
PfamPF002499.8E-8812854IPR001005SANT/Myb domain
PROSITE profilePS5129310.56710391090IPR017884SANT domain
SMARTSM007173.0E-710401088IPR001005SANT/Myb domain
SuperFamilySSF466896.55E-1010411090IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-410431084IPR009057Homeodomain-like
PfamPF002495.7E-710431082IPR001005SANT/Myb domain
CDDcd001678.91E-610441082No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1736 aa     Download sequence    Send to blast
MPSEPLPWDR KDFFKERRQH DRSELLRGGP RWREPPPRHH YGSSRWVPAD FRSTRGAPPG  60
HGKQGSWHMY PEESGHGFMP SRSNEKIVED ESCRQSRGDG GGKYGSRSSS RENRSFCQRD  120
WRRGGGLSWE AAASPSGPVR QHDTATNDQR PADVMVPHNS EHVNNTWDQS HSRDQHNKSG  180
STNGTPSTGQ RFERGNSLGS IEWRPLKWAR SSLSSRGSLS HSGSSKSMGV DSNETKAELQ  240
PGNSKALQSP TGDATACVTS AAPSEETSSR KKPRLGWGEG LAKYEKKKVP EDSAAKVGAC  300
ISGDSVEPGH PHPLNMADKS PRVAVSLDCP SPTTPSSVAC SSSPGLEDKQ PIKATNIDQD  360
VGNLCGSPSI ISQYHSEEFA FNLENFDLSQ ISNLNSSINE LLQSEDSSSV DSGFMRSTAV  420
NKLLIWKNDI SKVLEKTEVE IDSLENELKT LISEPEYTHL VPSGSCSPRK ECNSNYHEDR  480
GTTNIASRPA PLQVVIPEDV IGEEGTNIQE KEHAEVKVED IDSPGSATSK FVELPSEKDV  540
APISAMKHVG GMLISDDSKS LSNNVKACSS SEDKVKSRSS DVKVCSFSED MARDTLACVE  600
SIQLTARCSR PVSDGSLNCG KDALYNLILS ANKDTAYRAF DVFKNLLPAG KCSFDFSSVS  660
SLQIDHAVKE RFARRKQFKQ FKEKIIALKF RVHQHLWKED MRMLSARKFR AKSQKKFDFS  720
LRPVRIGHQK HRSTVRSRFS TTVGNSSLVP SSEVLNFASR LLSDLRAKVY RNTLRMPALV  780
LDRKERKLSR FISKNSLVED PCAVEKERSV INPWTPEETE IFIDKLATFG KDFRKIASFL  840
DHKTTADCIE FYYKNHKSDC FERTKRKPDY SKQAKVCSAN TYLVASSGKR WNREANSVSL  900
DILGAASAIA ANVEDSAASA IAANVEDSIE IQQKCTSKYS VRMVTEHKTY RHNELESSNS  960
LDVCHSERER VAADVLTGIC GSLSSEAMSS CITSSIDPAE GNQEWKHQKV GSSTRLPLTP  1020
EVTQSVDDET CSDESCGEMD PTDWTDEEKS IFIQAVSAYG KDFVMISRCV RTRSREHCKI  1080
FFSKARKCLG LDKILPGPGN LVRQDVNGGN DPDACVIETE LLCNESSLKL KELSDLCVSA  1140
GISKPDMTSS DDKDGAGELD SVDTELVSKN SVQVNCHVDK QRVEFDRHCE IQIGACTEYG  1200
RGDENMVTVS QEGGVQIDGD VSENGPADIL CANKVSGEHS GEEIKGVVPE HDLKNRKADS  1260
AEVGRSNFSL EDTKSNVVSR GSNSHLAAVR EAELCPLNGS QNTTLLESDS ECKPDVNCSG  1320
SNISVQRKKM PRASNAVYLS ELELENVGDQ QRENATQSAE QPLPSTSRIA HIDSRQILGS  1380
YSLGESDTKE SGDGCSTSAS LQEIQKVAKN LRSSTSSTTG FFLQRCNGTN QEQTVGGSSS  1440
NVDKPCRNGD VKLFGQILSK PCPQTNTSCN AQQSDSSNQQ LKVCSNRSSA SHSLDGNSAT  1500
AKFEHNNFLG SENHQVRSFG FWDGNRIQTG FSSLPDSAIL LAKYPAAFGN YAISSSKVEQ  1560
QPPLHGVVKT ATERSLNGVP VFPTRDVSSN NGVAAADYQV YKSLDVQPFT IEMKQRQDAV  1620
FSEMQRRNGF DVVSSMQQQA RGVVVGRGGI LVGGQCTGVS DPVAAIKMHY AKAEQFSGQA  1680
TSIIREDDYW LSKGDISRPS RKISATGYAV SAGHELEYTP SWNLADSPRL LLVLEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C5e-14771862494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D5e-14771862494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803598.10.0PREDICTED: uncharacterized protein LOC104248943
RefseqXP_016486022.10.0PREDICTED: uncharacterized protein LOC107806392
TrEMBLA0A1S4BAX10.0A0A1S4BAX1_TOBAC; uncharacterized protein LOC107806392
TrEMBLA0A1U7YKF20.0A0A1U7YKF2_NICSY; uncharacterized protein LOC104248943
STRINGXP_009803598.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59042332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-154MYB family protein