PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf14708g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 95aa MW: 10837.3 Da PI: 8.7719 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 74.4 | 1.9e-23 | 26 | 74 | 1 | 49 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 +Cq+++C+adls+ak+yhrrhkvC+vhska+ +lv +++qrfCq Csr Niben101Scf14708g00003.1 26 ICQIDDCQADLSNAKDYHRRHKVCDVHSKAARALVGNVMQRFCQHCSRL 74 5***********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-23 | 19 | 74 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 16.982 | 24 | 95 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-22 | 25 | 76 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.4E-17 | 27 | 74 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MEREEEEEKW QGKKTKVGGA SSKRAICQID DCQADLSNAK DYHRRHKVCD VHSKAARALV 60 GNVMQRFCQH CSRLGFNWTF FDYSLMRGSG VVLGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 4e-21 | 27 | 74 | 6 | 53 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019253402.1 | 2e-35 | PREDICTED: squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9S7P5 | 1e-24 | SPL12_ARATH; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A1J6IU13 | 4e-34 | A0A1J6IU13_NICAT; Squamosa promoter-binding-like protein 1 | ||||
STRING | Solyc05g053240.2.1 | 2e-32 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 1e-27 | squamosa promoter-binding protein-like 12 |
Publications ? help Back to Top | |||
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