PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf14662g01006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 472aa MW: 53225.1 Da PI: 6.351 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 472.2 | 2.7e-144 | 47 | 469 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++lLl+cA++vssg+le+a+ +L ++s+lasp+gd+mqR+a+yfteALa r++rs++++ykal++++ s +se + + k+f+ Niben101Scf14662g01006.1 47 LIHLLLACANHVSSGNLENANIALDHISQLASPNGDTMQRIASYFTEALADRILRSWPGIYKALRSTKLS--VVSEDILVKKMFF 129 689*************************************************************999998..69*********** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 e +P+lk++++++NqaI ea+ege++vHi+D++++++lQW aLlq L++Rpegpp+lRiTgv++ +ke l +++ L++ Ae Niben101Scf14662g01006.1 130 EFFPFLKVAFVVTNQAIIEAMEGEKMVHIVDLNAGEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLDQMAYVLTEEAE 210 ****************************************************************....9**************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll......................................... 214 +l++pf+f+ v+++ledl++e+Lrvk+gEala+++v+qlh+ll Niben101Scf14662g01006.1 211 KLDIPFQFSQ-VVSQLEDLDVEKLRVKTGEALAISSVMQLHTLLghdneprkksplpfkhsngvnlhralinqntlgellekdmg 294 **********.799*********************************************************************** PP GRAS 215 ...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +++++++ + d +L+++ +lsPkv+vv+eq+++hn+++++er++e+l+yy+alfd+le+ lpr+s er k Niben101Scf14662g01006.1 295 hmvnsiypnsndtasSSPLCSTTKMDVFLNALLGLSPKVMVVTEQDSNHNGTTLMERLSESLHYYAALFDCLESALPRTSLERLK 379 ***********9988777888889************************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 vE+ llg+ei+n++aceg er+erhe+lekW +r++ aGF++vpls++a+ qa++ll+ ++s+gy+++ee+g++v++W+dr+L+s Niben101Scf14662g01006.1 380 VEKLLLGEEIKNIIACEGIERKERHEKLEKWFQRFDVAGFGNVPLSYYAMLQARRLLQSYNSEGYKIKEENGCVVICWHDRALFS 464 ************************************************************************************* PP GRAS 370 vSaWr 374 vS+Wr Niben101Scf14662g01006.1 465 VSSWR 469 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.595 | 21 | 449 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.5E-142 | 47 | 469 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MLQDDGSSSV TSSSPIQIFP MMSLSPGFSS SNQWLKELKS EERGLYLIHL LLACANHVSS 60 GNLENANIAL DHISQLASPN GDTMQRIASY FTEALADRIL RSWPGIYKAL RSTKLSVVSE 120 DILVKKMFFE FFPFLKVAFV VTNQAIIEAM EGEKMVHIVD LNAGEPLQWR ALLQDLSARP 180 EGPPHLRITG VHQQKEVLDQ MAYVLTEEAE KLDIPFQFSQ VVSQLEDLDV EKLRVKTGEA 240 LAISSVMQLH TLLGHDNEPR KKSPLPFKHS NGVNLHRALI NQNTLGELLE KDMGHMVNSI 300 YPNSNDTASS SPLCSTTKMD VFLNALLGLS PKVMVVTEQD SNHNGTTLME RLSESLHYYA 360 ALFDCLESAL PRTSLERLKV EKLLLGEEIK NIIACEGIER KERHEKLEKW FQRFDVAGFG 420 NVPLSYYAML QARRLLQSYN SEGYKIKEEN GCVVICWHDR ALFSVSSWRC RK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-41 | 35 | 471 | 7 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019236517.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A1J6JZ68 | 0.0 | A0A1J6JZ68_NICAT; Scarecrow-like protein 3 | ||||
STRING | XP_009761009.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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