PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf14562g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 550aa MW: 61355.7 Da PI: 7.4825 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.8e-15 | 59 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l +av+ + g++Wk+Ia+ + R++ qc +rwqk+l Niben101Scf14562g00013.1 59 KGGWTPEEDDTLRRAVAVYRGKCWKKIAQFFL-DRSEVQCLHRWQKVL 105 688****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 61 | 2.5e-19 | 111 | 157 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l Niben101Scf14562g00013.1 111 KGPWTQEEDDKIIELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 55.7 | 1.1e-17 | 163 | 206 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l+da++ +G++ W+ Ia+ ++ gRt++ +k++w++ Niben101Scf14562g00013.1 163 KDAWTLEEELALLDAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.531 | 54 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.51E-14 | 55 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-14 | 58 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-14 | 59 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 61 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.53E-12 | 62 | 105 | No hit | No description |
PROSITE profile | PS51294 | 32.074 | 106 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-31 | 108 | 204 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-18 | 110 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-19 | 111 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.75E-15 | 113 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 114 | 160 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-23 | 161 | 212 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-17 | 162 | 210 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.569 | 162 | 212 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.9E-15 | 163 | 206 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.31E-12 | 165 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MDELKIEDCC TENKQSTAAS ASSVSENSGS VTVKSLKVCS PMPTSPAHRR TSGPIRRAKG 60 GWTPEEDDTL RRAVAVYRGK CWKKIAQFFL DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD 120 KIIELVARYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDAWTLEE ELALLDAHRI 180 YGNKWAEIAK VLPGRTDNAI KNHWNSSMKK KLDFYLATGN LPSVGRDGLQ NGCKDTTASA 240 EKALVCSHKG SDSTELASSG TTDVCKMENC DKNHQDAKLL VANIDASNSG PKNESADSEV 300 VRWEAESPVM DSIHVEQIKE IKFEGYGKNS EVEQFKVIET PFSCEIPAYG TLYYEPPQLE 360 SCISMDSDHL NIRWEHCESD SSPSLSPSSF LTPPSSLKDS SLYSQTPESI LKTAARSFPN 420 TPSIFRKRKL NYTPGNKIGN ADGDTHKDEV HDASEDKQTD SSEKYVIIRG SSSKNPSYNG 480 IGPCDTQVFN ASPPYRIRSK RKSIFRSVEK QLKFAFDNEQ HNTSTGTNDS TVKEISHVAD 540 CLRATRMGIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-67 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-67 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009787902.1 | 0.0 | PREDICTED: uncharacterized protein LOC104235784 isoform X1 | ||||
Swissprot | Q6R032 | 1e-148 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A1U7X726 | 0.0 | A0A1U7X726_NICSY; uncharacterized protein LOC104235784 isoform X1 | ||||
STRING | XP_009787902.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5461 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-132 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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