PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf14344g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 342aa MW: 37469.5 Da PI: 6.188

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf14344g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.5	2.3e-08	186	233	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Niben101Scf14344g00004.1 186 SHSLAERARREKINARMKLLQELVPGC----NKISGMAVVLDEIINHVQSLQ 233 8*************************9....788888999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.09E-14	180	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.25E-10	180	237	No hit	No description
PROSITE profile	PS50888	14.456	182	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-14	185	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	186	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.4E-8	188	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MESTQVRSAS CGGKEGETAT GFHHRGGEGQ SIIMPVPMET AGNSFTALLE LPPNHALDLL 60 VHSDEMGSAK LSLPETHNKP YYSSPLIDRT SAGEFSVFAA GNSSENGSFP SDSQFVKQEP 120 VDSDSNPNSS PEFSNPTFDQ KTTKRKERQK KGKESSSKKS KKSANDTSEK LPYVHVRAAR 180 GQATDSHSLA ERARREKINA RMKLLQELVP GCNKISGMAV VLDEIINHVQ SLQRQVEFLS 240 MRLAAVNPRV DFNLDSLFTA ESGSAVDSSF AGMVAPSIWP EGQTSGNRNQ YQHLLQMDGF 300 NQPVWVREDD NSGFITPENS FLTYDSSANS ASLHQNQLKM EL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MESTQVRSAS CGGKEGETAT GFHHRGGEGQ SIIMPVPMET AGNSFTALLE LPPNHALDLL  60
VHSDEMGSAK LSLPETHNKP YYSSPLIDRT SAGEFSVFAA GNSSENGSFP SDSQFVKQEP  120
VDSDSNPNSS PEFSNPTFDQ KTTKRKERQK KGKESSSKKS KKSANDTSEK LPYVHVRAAR  180
GQATDSHSLA ERARREKINA RMKLLQELVP GCNKISGMAV VLDEIINHVQ SLQRQVEFLS  240
MRLAAVNPRV DFNLDSLFTA ESGSAVDSSF AGMVAPSIWP EGQTSGNRNQ YQHLLQMDGF  300
NQPVWVREDD NSGFITPENS FLTYDSSANS ASLHQNQLKM EL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019243029.1	0.0	PREDICTED: transcription factor bHLH48-like
TrEMBL	A0A1J6IHG5	0.0	A0A1J6IHG5_NICAT; Transcription factor bhlh48
STRING	XP_009615802.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4029	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	6e-74	bHLH family protein