PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf14233g00008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 193aa MW: 22166.1 Da PI: 10.6105

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf14233g00008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.6	3.7e-19	10	59	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ + +r++lg+f tae Aa a+++a+++++g Niben101Scf14233g00008.1 10 HYRGVRQRP-WGKYAAEIRDPK----KaTRVWLGTFETAEAAAIAYDEAALNFKG 59 7******.******94....45*********************9987 PP
2	AP2	60.6	3.7e-19	84	133	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ + +r++lg+f tae Aa a+++a+++++g Niben101Scf14233g00008.1 84 HYRGVRQRP-WGKYAAEIRDPK----KaTRVWLGTFETAEAAAIAYDEAALNFKG 133 7******.******94....45*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.8E-32	9	68	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.88E-21	10	68	IPR016177	DNA-binding domain
Pfam	PF00847	2.3E-12	10	59	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.512	10	67	IPR001471	AP2/ERF domain
CDD	cd00018	7.75E-17	10	68	No hit	No description
SMART	SM00380	9.4E-37	10	73	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-11	11	22	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-11	33	49	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.8E-32	83	142	IPR001471	AP2/ERF domain
Pfam	PF00847	2.3E-12	84	133	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.88E-21	84	142	IPR016177	DNA-binding domain
CDD	cd00018	7.75E-17	84	142	No hit	No description
PROSITE profile	PS51032	23.512	84	141	IPR001471	AP2/ERF domain
SMART	SM00380	9.4E-37	84	147	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MIGNIERRRH YRGVRQRPWG KYAAEIRDPK KATRVWLGTF ETAEAAAIAY DEAALNFKGN 60 KAKLNFPERV LAKTEFGNIE RRRHYRGVRQ RPWGKYAAEI RDPKKATRVW LGTFETAEAA 120 AIAYDEAALN FKGNKAKLNF PERVLAKTEF GYLTTNTQQQ LINVSDANSQ LQHYPQLLRS 180 GNNNADSSIF KIY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-25	9	144	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	1e-25	9	144	4	66	ATERF1
3gcc_A	1e-25	9	144	4	66	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269\|PubMed:23616605}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269\|PubMed:23616605}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019102008.1	3e-60	PREDICTED: ethylene-responsive transcription factor ERF071-like
Swissprot	Q9FH54	1e-36	EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBL	A0A1J6J6G2	4e-58	A0A1J6J6G2_NICAT; Ethylene-responsive transcription factor erf114
STRING	XP_010513072.1	2e-59	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61890.1	5e-28	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]