PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14179g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 338aa    MW: 37879.8 Da    PI: 10.0029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14179g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-13244289655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Niben101Scf14179g00003.1 244 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 289
                               689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-16241298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-12242293No hitNo description
Gene3DG3DSA:4.10.280.108.3E-16243301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10244289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-13244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
EYRWFVESIE AYYYSIFFFS SLKQKSQKKR TTKYSPEEKK RKRKEKPIAV EITGRSSAMQ  60
RGSGGAGGGG SGLSRYRSAP ATWLEALLES DTENEVVLNP SPILHSPNKP PPHPSTTQQQ  120
LPELVKQETR FTSDPGLFES GGSSNFLRQQ SSPAEFLSHI NSDGYFSSYG IPSSLNYISQ  180
PIKRPREDDS ESSPRKLSNH LKGEPSGHLR GSGGSLDAEM EKLMDDLVPC KVRAKRGCAT  240
HPRSIAERVR RTRISDRIRK LQELVPNMDK QTNTADMLEE AVEYVKFLQK QIQILMAIDK  300
SLATAESKIS FSFTAGLLFS EDVVRIGRPV IFKAKSNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12743KKRTTKYSPEEKKRKRK
23843KKRKRK
34045RKRKEK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788006.11e-159PREDICTED: transcription factor bHLH80-like isoform X1
RefseqXP_016453059.11e-159PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P87e-60BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A1S3YLE91e-157A0A1S3YLE9_TOBAC; transcription factor bHLH80-like
TrEMBLA0A1U7XED01e-157A0A1U7XED0_NICSY; transcription factor bHLH80-like isoform X1
STRINGXP_009788006.11e-158(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.16e-48bHLH family protein