PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13995g01013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 348aa    MW: 38767.3 Da    PI: 10.0234
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13995g01013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-101869147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                              +++WT eE+  l+ ++ ++G+g W+tI +          R+  ++k++w++ 
  Niben101Scf13995g01013.1 18 KQKWTSEEEAALKAGILKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRNM 69
                              79***********************************66***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-151586IPR009057Homeodomain-like
SMARTSM007178.7E-61772IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-131769IPR009057Homeodomain-like
PROSITE profilePS500907.3991870IPR017877Myb-like domain
PfamPF002492.6E-71869IPR001005SANT/Myb domain
CDDcd116605.13E-181970No hitNo description
PROSITE profilePS5150423.165127201IPR005818Linker histone H1/H5, domain H15
SMARTSM005261.3E-11131196IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.6E-14132206IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.09E-15132209IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.5E-7138194IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MHMRERGLFL RFLMGAPKQK WTSEEEAALK AGILKHGPGK WRTILKDPEF SGVLCLRSNV  60
DLKDKWRNMT VMANGWNSRE QARLAVKRTK QAPRQDGSPV ADTTTAESDE EAAEAQAATT  120
SSGSPQIHGS RKSMIRLDNL IMEAISSLKE PDGSNKTTIA AYIEDQYWAP PNFIRLLSGK  180
LKYLTATGKL IKIKRKYRVA PTSTPSDRRR NLSSPFLDSR QRIFSKVDRD YMDMLSTSQI  240
DLEIANKMRN MTPQEASAAA AQAVTEAEAA IAEAEEAARD AEAHEADAEA AKAFSDATKT  300
LHGRSAPRMV RHPSISIIGS LSLLPIFPFN LGRMCVLPCP WNRYWFSV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019243172.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_019243173.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
SwissprotQ8VWK43e-94TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A1J6J3I20.0A0A1J6J3I2_NICAT; Telomere repeat-binding factor 1
STRINGXP_009799672.11e-173(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-87telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]