PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf13916g01021.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 337aa MW: 35849.5 Da PI: 8.3687

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf13916g01021.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	5.7e-08	172	197	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k e Cr + ++G C++G++C+F Hg+ Niben101Scf13916g01021.1 172 KSEVCRWWGASGKCRFGSKCRFVHGK 197 668999999***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.3E-12	168	202	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-4	170	197	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.558	170	198	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.92E-8	170	202	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.0E-5	172	197	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MDFFYGDSND SQASKVQSLD VSPINSQNFI GCDRFYPGPK TRILDPYASS DSSGSSANRI 60 LSPLARYLHS RSPVPFSSDS PERRSLINTN SGSRSGSGGG GVVFRSPLAS IENIEIPSAF 120 RTPVKVEEDV VVMDGILVEP KHGARAKSLP SMSDSGGRLS SSTSGSDNSS HKSEVCRWWG 180 ASGKCRFGSK CRFVHGKEDL RPTAFANRNQ SEAPSSRSYS SGSCAYGPRG QSAHHQVHSA 240 ASSTESAAMA TPATVKKVVT TKDKEPPSSG SSPSSTTSTI ALSGTDWSPL DDNIEVSLPS 300 SGKKCPSRED VDAHIQTVLY GPSGRKRLPV FVEFSEE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019249952.1	1e-176	PREDICTED: mRNA decay activator protein ZFP36L2-like
Refseq	XP_019249953.1	1e-176	PREDICTED: mRNA decay activator protein ZFP36L2-like
Refseq	XP_019249954.1	1e-176	PREDICTED: mRNA decay activator protein ZFP36L2-like
TrEMBL	A0A1J6IJC1	1e-175	A0A1J6IJC1_NICAT; Uncharacterized protein
STRING	XP_009589110.1	1e-173	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7765	18	24