PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf13802g04006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YB | ||||||||
Protein Properties | Length: 140aa MW: 16115.3 Da PI: 7.5133 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 37.7 | 4.9e-12 | 27 | 112 | 8 | 88 |
NF-YB 8 lPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 lP + v r++k l + ++ +s +d+ e + fi ++++ a+d c++ kr+tin++d++ al ++ f +++epl++ l Niben101Scf13802g04006.1 27 LPKTIVRRLVKDKLSQlstDTDMSllRDSLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFIEPLRASL 111 666777777776654311133333226777778999999******************************************9988 PP NF-YB 88 k 88 + Niben101Scf13802g04006.1 112 E 112 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.1E-27 | 19 | 128 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.29E-21 | 26 | 126 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-8 | 27 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MAEIEKQKDK EKEKLPAATV QIEQEGLPKT IVRRLVKDKL SQLSTDTDMS LLRDSLLAFS 60 ESARIFIHYL SATANDICKE SKRQTINAED VFKALEEIEF PEFIEPLRAS LEERLKYSDK 120 GTRKGSQDHR SPQYLTKKQS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251060.1 | 2e-63 | DNA polymerase epsilon subunit 3 | ||||
Refseq | XP_015057038.1 | 3e-63 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A3Q7IZT6 | 6e-62 | A0A3Q7IZT6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g068480.1.1 | 1e-62 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10161 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-28 | nuclear factor Y, subunit B11 |