PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13779g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 231aa    MW: 24890.9 Da    PI: 9.0201
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13779g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-202170255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+tae+Aa+a++aa+++++g
  Niben101Scf13779g00003.1 21 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEDAARAYDAAAREFRG 70
                              6********.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.4332178IPR001471AP2/ERF domain
CDDcd000185.35E-192177No hitNo description
SuperFamilySSF541714.38E-222178IPR016177DNA-binding domain
SMARTSM003801.7E-382184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-322177IPR001471AP2/ERF domain
PfamPF008471.2E-132170IPR001471AP2/ERF domain
PRINTSPR003672.7E-112233IPR001471AP2/ERF domain
PRINTSPR003672.7E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAPKEKGTAA GKVNGVSKEV HYRGVRKRPW GRYAAEIRDP GKKSRVWLGT FDTAEDAARA  60
YDAAAREFRG TKAKTNFLVL EQENVKLANG NRSPSYSSTV ENSPPVMPEN SPPAVILDTS  120
PLDLSLGGSG SLFSNGVGRF LFQNHLFHGS PVAGGVTSVN HMYYLEAVQR EQVISSYKKS  180
CRTTAEFIAG CGGGASGESD SSSVIDFMGH DLKPTTRPIN LDLNLPPPEN M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-211777162ATERF1
3gcc_A2e-211777162ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618542.11e-148PREDICTED: ethylene-responsive transcription factor 4-like
RefseqXP_016448710.11e-148PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLE7FKW31e-146E7FKW3_TOBAC; Ethylene response factor 6b
STRINGXP_009618542.11e-147(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-29ethylene responsive element binding factor 4