PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13695g01014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 282aa    MW: 31995.4 Da    PI: 8.7046
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13695g01014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-1999149256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Niben101Scf13695g01014.1  99 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 149
                               59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.41E-1798157No hitNo description
SMARTSM003805.2E-3699162IPR001471AP2/ERF domain
PROSITE profilePS5103223.30199156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-3199157IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2299156IPR016177DNA-binding domain
PfamPF008472.6E-13100149IPR001471AP2/ERF domain
PRINTSPR003673.3E-10100111IPR001471AP2/ERF domain
PRINTSPR003673.3E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSCIFDEAAQ IRSSLSQLLL TSGTNTLDSI FSHCQETNQM TSPVFEPLGS SVYLRQRDLL  60
QKFCQENITN ISIPTTSKTF PLHSSLYTRS YRFPEKKKLY RGVRQRHWGK WVAEIRLPQN  120
RMRVWLGTYD TAEAAAYAYD RAAYKLRGEY ARLNFPNIRD PSKLGFGDSE KMNAVKNAVD  180
AKIQAICQKV KREKAKKGTK KKCENESKIK ETMDSSSSTS SLVGDMISPS VSDDGLWKSE  240
NSNCSIFGDC LKEPLMESEF DSCSLARMPS FDPELIWEVL AN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2196156263ATERF1
3gcc_A4e-2196156263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604256.11e-175PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-72ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1S3YT291e-172A0A1S3YT29_TOBAC; ethylene-responsive transcription factor ERF061
STRINGXP_009604256.11e-174(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-55ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]