PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13683g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 289aa    MW: 30619.5 Da    PI: 9.5774
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13683g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.3e-0997122227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               k +lC+ +     Ck+Gd+C+FaH++
  Niben101Scf13683g01004.1  97 KSKLCSKYNTAEGCKFGDKCHFAHSE 122
                               678*********************95 PP
2zf-CCCH32.11.9e-10256280126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt+ C++f++ G C +G++C+FaHg
  Niben101Scf13683g01004.1 256 FKTKMCSNFSK-GSCTFGEKCHFAHG 280
                               69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.313462IPR000571Zinc finger, CCCH-type
SMARTSM003561.33461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-63562IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-73659IPR000571Zinc finger, CCCH-type
PfamPF146080.94259No hitNo description
SuperFamilySSF902291.96E-795125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.16995123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-1195125IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-697122IPR000571Zinc finger, CCCH-type
SMARTSM003560.007997122IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.07E-15156235IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.1E-16163234IPR004088K Homology domain, type 1
SMARTSM003223.4E-12163233IPR004087K Homology domain
PROSITE profilePS5008413.984164228IPR004088K Homology domain, type 1
PfamPF000135.2E-11166230IPR004088K Homology domain, type 1
CDDcd001054.05E-13166228No hitNo description
PROSITE profilePS5010316.22255282IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4255281IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-7256280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-14256287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-8256285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEFGRKRIVD GAFAGNGGMK KSRNESESFT SGVGSKSKPC MKFYSTSGCS YGEGCHFLHY  60
VPGYSAMNQI SNMGSNPSVP VGRNRAPFSD GPASTMKSKL CSKYNTAEGC KFGDKCHFAH  120
SEMEIGKPVA PAYDDFQAAG PPSRFPGYHK PSQPSPAATN FGASATTTIS IDAALAGTII  180
GRNGVNSKQI CRLTGVKLSV KDHETDSNRR NIELQGTFDQ INQASAMVRE IISNVGTPTG  240
GPKNTGPFAR GPAGPFKTKM CSNFSKGSCT FGEKCHFAHG ASELQKPLA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795947.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
RefseqXP_016500625.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
SwissprotQ7F8R01e-93C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S4CHE80.0A0A1S4CHE8_TOBAC; zinc finger CCCH domain-containing protein 44-like
TrEMBLA0A1U7XVA70.0A0A1U7XVA7_NICSY; zinc finger CCCH domain-containing protein 44-like
STRINGXP_009795947.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.19e-60C3H family protein