PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf13640g01002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 196aa MW: 22695.4 Da PI: 5.113

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf13640g01002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.8	3.3e-30	27	79	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtpeLH+ F+ea+e LGGs+kAtPk+i ++m vkgL ++hvkSHLQ+YR Niben101Scf13640g01002.1 27 PRLRWTPELHQLFIEAIEYLGGSDKATPKRIQQMMAVKGLKISHVKSHLQMYR 79 8**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.972	23	83	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-27	24	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-15	27	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-23	27	80	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-8	28	79	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MMEFSIMKNS CSQKISRVRQ YKKSSVPRLR WTPELHQLFI EAIEYLGGSD KATPKRIQQM 60 MAVKGLKISH VKSHLQMYRN LKEPASINIV RSSFPQQIEP GSQVSYKAEV SEYSDQIAEN 120 IYCYDYQEVQ GSLSSEMTKE EEYGEISEFP QADGVCEREI NFWPNFDDYQ HSQSDNSTKD 180 DSHINLDLSI SSCFYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-19	28	82	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-19	28	82	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-19	28	82	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-19	28	82	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-19	28	82	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-19	28	82	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-19	28	82	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-19	28	82	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785228.1	1e-115	PREDICTED: transcription repressor KAN1-like
TrEMBL	A0A1U7X317	1e-114	A0A1U7X317_NICSY; transcription repressor KAN1-like
STRING	XP_009785228.1	1e-115	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9459	13	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-27	G2-like family protein