PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13622g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 309aa    MW: 35096.8 Da    PI: 5.9279
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13622g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-092372712155
                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                               k +yps++++  LA+++gL+++q+ +WF N+R ++
  Niben101Scf13622g00002.1 237 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 271
                               569*****************************885 PP
2ELK41.43e-14191212122
                       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                               ELK qLlrKYsgyLgsLkqEF+
  Niben101Scf13622g00002.1 191 ELKGQLLRKYSGYLGSLKQEFM 212
                               9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-185296IPR005540KNOX1
PfamPF037904.9E-215493IPR005540KNOX1
SMARTSM012561.3E-24101152IPR005541KNOX2
PfamPF037919.3E-21105151IPR005541KNOX2
PfamPF037894.9E-11191212IPR005539ELK domain
SMARTSM011882.8E-8191212IPR005539ELK domain
PROSITE profilePS5121311.174191211IPR005539ELK domain
PROSITE profilePS5007112.957211274IPR001356Homeobox domain
SMARTSM003891.2E-12213278IPR001356Homeobox domain
SuperFamilySSF466891.2E-19213288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-28216276IPR009057Homeodomain-like
CDDcd000864.05E-12223275No hitNo description
PfamPF059206.9E-17231270IPR008422Homeobox KN domain
PROSITE patternPS000270249272IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MMMLMPRPPI NNNNAESSNN IGGNSNNNIL FLPFMDNNND NPHEDANCSS SSSIKSKIMA  60
HPHYPRILYA YVNCQKIGAP PEVVARLEEV CATSATIGRN SGGIIGEDPA LDQFMEAYCE  120
MLIKYEQELS KPLKEAMVFL SRIECQFKAL TLTSSSESVA ALGEAIDRNG SSEEEVDVNN  180
GFIDPQAEDQ ELKGQLLRKY SGYLGSLKQE FMKKRKKGKL PKEARQQLLD WWTRHYKWPY  240
PSESQKLALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVMDAAHPHY YMDNVLGNPF  300
PMDITPTLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206215LKQEFMKKRK
2212216KKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432572.10.0PREDICTED: homeobox protein knotted-1-like LET6
SwissprotO222991e-155LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLA0A1S3WY780.0A0A1S3WY78_TOBAC; homeobox protein knotted-1-like LET6
STRINGXP_009613677.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-135KNOX/ELK homeobox transcription factor