PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf13533g01001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 317aa MW: 35321 Da PI: 6.5502

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf13533g01001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.8e-39	47	107	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++++kcprCdst+tkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+r nkk+s Niben101Scf13533g01001.1 47 HDHSIKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTEGGTLRNIPVGGGCRINKKVS 107 57889*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	41	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-32	49	105	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.388	51	105	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	53	89	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MDSSNWLQGT IHEEGAAGID SSSSPISEEI LTCSRPLIVE RRLRPPHDHS IKCPRCDSTH 60 TKFCYYNNYS LSQPRYFCKT CRRYWTEGGT LRNIPVGGGC RINKKVSSKK SNIETANNNQ 120 NPTDIQLSFP DQMPPFSHHH FMSSNNFGHG NHQGNNFMLE NHTPIDFMES KYEALVGTTT 180 SRNQDFLGNG DIGMISTPTG FGHEINSHGN IIPPNFAFGM TTMDAENNFG TTVMDSSHHH 240 QRLMLPNYEN NQHEEQINVS VDVKPNPKIL SLEWHDQVQG CSDAGKESFG YYSSVGGLGS 300 WTGLINSYGS SATNPLV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019240135.1	0.0	PREDICTED: dof zinc finger protein DOF5.6-like
TrEMBL	A0A1J6K5Z6	0.0	A0A1J6K5Z6_NICAT; Dof zinc finger protein dof5.6
STRING	XP_009765174.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4895	22	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	4e-43	Dof family protein