PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13411g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 892aa    MW: 98856 Da    PI: 6.4182
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13411g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24130231199
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD 
  Niben101Scf13411g01001.1 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDA 213
                               99*****************************97677775.9******************************************** PP

                               EEEEE-SSSEE..EEEEE-S CS
                        B3  80 vvFkldgrsefelvvkvfrk 99 
                               v+F   ++++ +l+++++r+
  Niben101Scf13411g01001.1 214 VIFI--WNENNQLLLGIRRA 231
                               ****..7888889****997 PP
2Auxin_resp120.99.7e-40256339183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aahaa+t+s F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Niben101Scf13411g01001.1 256 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 339
                               79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-49115259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-44123245IPR015300DNA-binding pseudobarrel domain
CDDcd100175.19E-23129230No hitNo description
PfamPF023621.1E-22130231IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042130232IPR003340B3 DNA binding domain
SMARTSM010194.3E-25130232IPR003340B3 DNA binding domain
PfamPF065071.2E-34256339IPR010525Auxin response factor
PfamPF023098.8E-7751840IPR033389AUX/IAA domain
SuperFamilySSF542771.96E-7752832No hitNo description
PROSITE profilePS5174523.8758842IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    Send to blast
MRVSSAGFNP QPEEAAGEKK CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN  60
KEVDAHIPNY PGLPPQLICQ LHNLTMHADV ETDEVYAQMT LQPLSAQEQK DVCLLPAELG  120
IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPCQEL IAKDLHGNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDAVIFIWNE NNQLLLGIRR ANRPQTVMPS  240
SVLSSDSMHI GLLAAAAHAA ATNSRFTIFY NPRASPSEFV IPLAKYAKAV YHTRISVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTTFPMYPS PFSLRLKRPW PSLPVHSGFP NGDMTMNSPL SWLRGDIGDQ GIQSLNFQGY  420
GVTPFMQPRI DASMLGLQPD ILQTMAALDP SKFANQSFMQ FQQSIPGVSA SLSHSQILQP  480
SHSQQNLLHG FSENQLISQA QMLQQQLQRR QNYNDQQQLL QPQLQQHQEV NSSQFQHQQQ  540
TKAMSSLSQM TSAAQPQLSH LQVLSSTGSP QTFSDILGNH VNASSNSTMQ SLLSSFSRDG  600
ASAVLNMHEA HPLVSSSSSS KRIALESQLP SRVTPFAVPQ PEDVISHNTK VSDLSSLLPP  660
LPGRESFSDY RGVEDSQNNA MYGFNTDCLN ILQNGMSNMK DSTGDNGSLS IPYATSTFTN  720
TVGNEYPINS DMTTSSCVDE SGFLQSSENG DQRNPTNRTF VKVHKSGSFG RSLDISKFSS  780
YHELRSELAH MFGLEGLLED PERSGWQLVF VDRENDVLLL GDDPWQEFVN NVWYIKILSP  840
LEVQQMGKDG LDLPNAGLAQ RLPSNGVGCD DYMNQKGSRN TMNGIPLGSL DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621336042388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019249244.10.0PREDICTED: auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLD7P2310.0D7P231_NICBE; Auxin response factor
STRINGXP_009757615.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Todd AT,Liu E,Polvi SL,Pammett RT,Page JE
    A functional genomics screen identifies diverse transcription factors that regulate alkaloid biosynthesis in Nicotiana benthamiana.
    Plant J., 2010. 62(4): p. 589-600
    [PMID:20202168]