PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13206g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 416aa    MW: 46092.7 Da    PI: 9.3803
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13206g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC695.9e-22114157145
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                               d+epgrCrRtDGKkWRC+r+v++g+k+C  H+hrg  rsrk +e+
  Niben101Scf13206g00003.1 114 DPEPGRCRRTDGKKWRCKRDVIPGQKYCGQHMHRG-RRSRKLVEA 157
                               79*********************************.688888876 PP
2WRC58.61e-18303338237
                       WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrs 37 
                               +ep rCrR+DGKkWRCsr++++ +k+CE H+hrg +
  Niben101Scf13206g00003.1 303 TEPQRCRRSDGKKWRCSRNAIRRQKYCETHMHRGAK 338
                               79*******************************976 PP
3QLQ46.79.9e-175086137
                       QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                              s FT aQ+++Lk Q+ ++Ky+++++PvP +L + i++
  Niben101Scf13206g00003.1 50 SVFTTAQFHELKLQAVIFKYIVSGLPVPFHLFFTIWN 86
                              67*****************************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.7E-85086IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.7195186IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.1E-125285IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.778114160IPR014977WRC domain
PfamPF088793.8E-18115152IPR014977WRC domain
PROSITE profilePS5166719.571302346IPR014977WRC domain
PfamPF088792.3E-16304339IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MQPHLSSATP LSHSGKDERE KKEGSPPCIK LSLGYVVEEE EKGVNAIAKS VFTTAQFHEL  60
KLQAVIFKYI VSGLPVPFHL FFTIWNTVSS SLGSPVINKL YPTLGRFDYA SMVDPEPGRC  120
RRTDGKKWRC KRDVIPGQKY CGQHMHRGRR SRKLVEASEH VMKSDDICIT SKRTKLYANS  180
DDPGSKCAPA SSKTSCLSST SRNNQNNSVV EDSSAKPRPT NSCNSSEKQD NHMTFNRTDT  240
IAGIRTQSFI AGNDSDSKSI DFNRISPSKT NQKQSYGDAR NSGGLVPVVG ISAKSDLQQT  300
TETEPQRCRR SDGKKWRCSR NAIRRQKYCE THMHRGAKKI MAASDSVIVE PSKPSSYRFC  360
HQVIPKKDGT GINLNTSLSI SALPDPQNFM EDDDCNSNST SDATTITDEI PGFVSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800682.10.0PREDICTED: growth-regulating factor 9 isoform X2
RefseqXP_016473165.10.0PREDICTED: growth-regulating factor 9-like isoform X2
TrEMBLA0A1S4A9480.0A0A1S4A948_TOBAC; growth-regulating factor 9-like isoform X2
TrEMBLA0A1U7Y9880.0A0A1U7Y988_NICSY; growth-regulating factor 9 isoform X2
STRINGXP_009800681.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77981922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.12e-35growth-regulating factor 9