PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13167g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 284aa    MW: 31254.6 Da    PI: 10.4419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13167g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.7e-1296139447
                               S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               WT+eE+  ++ + ++lG+g+W+ I++    +Rt+ q+ s+ qky
  Niben101Scf13167g00009.1  96 WTEEEHTSFLIGLQKLGKGDWRGISKSYVPTRTPSQVASHAQKY 139
                               **************************9988*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.927621IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.76588144IPR017930Myb domain
SuperFamilySSF466891.42E-1690144IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1591142IPR006447Myb domain, plants
SMARTSM007172.2E-792142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-1093138IPR009057Homeodomain-like
CDDcd001671.21E-896140No hitNo description
PfamPF002495.5E-1096139IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MTKDARKCSH CGQNGHNSRT CNYNSKGIKL FGVRIDDMTN NNHHVDTKMK MKIGDHESAI  60
RRSKSLGNLE IHDHNAVLDS GYLSDGPRNR KKGTLWTEEE HTSFLIGLQK LGKGDWRGIS  120
KSYVPTRTPS QVASHAQKYF IRIASNDKNK RRPSVFDVNL KDSASAPLEQ LLDTCQIKGQ  180
AASCARPPLS PTTRPFGVPD LRRMPYMMGV PSGLTAAKVI APTVSWVPVF NFPPNQSHLN  240
YRFAAFVARP PTAALLSHPP PQSQPGHSAP LTNNDGLNIS IGAL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778274.10.0PREDICTED: transcription factor MYB1R1-like
RefseqXP_016481927.10.0PREDICTED: transcription factor MYB1R1-like
TrEMBLA0A1S4AZ370.0A0A1S4AZ37_TOBAC; transcription factor MYB1R1-like
TrEMBLA0A1U7WU950.0A0A1U7WU95_NICSY; transcription factor MYB1R1-like
STRINGXP_009778274.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117831823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.15e-53MYB_related family protein