PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13162g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 264aa    MW: 30319.8 Da    PI: 8.4457
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13162g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-152471148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT eEd ll++ v+ +G g+W++ a+  g++Rt+k+ ++rw++yl
  Niben101Scf13162g00010.1 24 KGPWTIEEDNLLIHHVTSHGEGRWNALAKSSGLKRTGKSSRLRWLNYL 71
                              79********************************************97 PP
2Myb_DNA-binding48.52e-1577120146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+ +++E++l+++++ ++G++ W++Ia+++  gRt++++k++w++
  Niben101Scf13162g00010.1  77 RGNLSPQEQLLILELHSKWGNR-WSKIAEHLR-GRTDNEIKNYWRT 120
                               7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-201874IPR009057Homeodomain-like
PROSITE profilePS5129413.9971971IPR017930Myb domain
SuperFamilySSF466891.88E-2722118IPR009057Homeodomain-like
SMARTSM007172.8E-112373IPR001005SANT/Myb domain
PfamPF002494.8E-132471IPR001005SANT/Myb domain
CDDcd001672.92E-82671No hitNo description
PROSITE profilePS5129424.02272126IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2275125IPR009057Homeodomain-like
SMARTSM007175.2E-1476124IPR001005SANT/Myb domain
PfamPF002491.5E-1477120IPR001005SANT/Myb domain
CDDcd001673.85E-1081120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MRKARLVKST STNSSNEDAL ELRKGPWTIE EDNLLIHHVT SHGEGRWNAL AKSSGLKRTG  60
KSSRLRWLNY LKPDVKRGNL SPQEQLLILE LHSKWGNRWS KIAEHLRGRT DNEIKNYWRT  120
RVQKQARQLK VDSNSRRFVE AVKSFWIPRL LEKMEQYCPS SSSPTSSSPT ITIEKQNSAL  180
PSSLINEQES LQSLNPKPNA CEEISPRFYS PESNSMAEDA TSFNGNSVYS NSTQDDCYHL  240
EPSSYFEEQP YFSALESQDM FISE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-242112624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229265.11e-168PREDICTED: transcription factor MYB24-like
SwissprotQ9C9G75e-78MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A314KLS41e-167A0A314KLS4_NICAT; Transcription factor myb108
STRINGXP_009778774.11e-166(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.14e-79myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]