PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf13146g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 567aa MW: 61487.6 Da PI: 7.0126 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 57.7 | 3.1e-18 | 155 | 241 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W++ + +L+ea+ e+ +l+rg+l++ +Weev++ + r ++ ++s +qCk+k +nl+kryk ++++++++ ++s++p+f+ Niben101Scf13146g00002.1 155 EWSDTAIACLLEAYMEKFVQLNRGNLRGRDWEEVAAMVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GITTSHWPWFK 238 5*************************************767778899************************99.556669***** PP trihelix 84 qle 86 q+e Niben101Scf13146g00002.1 239 QME 241 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.0E-20 | 153 | 243 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 7.1E-64 | 317 | 560 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 31.748 | 321 | 561 | IPR015963 | Uridylate kinase, bacteria |
SuperFamily | SSF53633 | 2.88E-51 | 322 | 560 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 6.24E-109 | 324 | 561 | No hit | No description |
Pfam | PF00696 | 1.5E-20 | 325 | 540 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MASCDDDFSL LGDDNAAVTV TPTTTTGHTS NPTYHHHHQP FSHRYKPAQI HAPPISSGSA 60 KNISGDEDGD GYSDNNNTPS YHIGVNPYDT DSNPFENDGD VNRSRLNQSN DNKRTDREDI 120 SDNGTPYNYK RSKITSSSAA SGGNGSGEYR KDREEWSDTA IACLLEAYME KFVQLNRGNL 180 RGRDWEEVAA MVSERCEKQS KSVEQCKNKV DNLKKRYKLE RHRMSNGGIT TSHWPWFKQM 240 EQIVGNPVSG KATSTSEEDK AIQMEQIVGN SVSGKATSTS EEDKAIIAVT NSGTSRQSKR 300 YGTAVPGPSG QIVKSKSSIG PRWRRVVLKI SGAALAGVTP NTIDPNNLDP KVAMLVAREV 360 SIACRLGIEV AIVVGGRNFF CRDTWVTSTG LDRCTAYQIG MMATMMNSIL LQSALEKLGV 420 QTRVQSAFSM PELAEPYSRQ RAVRHLEKGR VVIFGGIGAG TGNPLFSTDT AAALRASEIH 480 ADALLKGTNV EGVDVCDSRN SNVAAEHISF RELVSGGASP LDLMAVTLCE ENAIPVVIFN 540 LHGPGNISRA LCGEQVGTLI DQTGRVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3nwy_A | 1e-55 | 323 | 560 | 50 | 279 | Uridylate kinase |
3nwy_B | 1e-55 | 323 | 560 | 50 | 279 | Uridylate kinase |
3nwy_C | 1e-55 | 323 | 560 | 50 | 279 | Uridylate kinase |
3nwy_D | 1e-55 | 323 | 560 | 50 | 279 | Uridylate kinase |
3nwy_E | 1e-55 | 323 | 560 | 50 | 279 | Uridylate kinase |
3nwy_F | 1e-55 | 323 | 560 | 50 | 279 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019250790.1 | 0.0 | PREDICTED: uncharacterized protein LOC109229713 | ||||
TrEMBL | A0A1S4AJN5 | 0.0 | A0A1S4AJN5_TOBAC; uncharacterized protein LOC107798398 | ||||
TrEMBL | A0A1U7YW42 | 0.0 | A0A1U7YW42_NICSY; uncharacterized protein LOC104248417 | ||||
STRING | XP_009802965.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8728 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 0.0 | Trihelix family protein |