PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12874g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 341aa    MW: 37766.7 Da    PI: 8.211
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12874g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.8e-18186240256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ ++tkeq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Niben101Scf12874g00009.1 186 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 240
                               788899***********************************************98 PP
2HD-ZIP_I/II127.55.8e-41186276192
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +
  Niben101Scf12874g00009.1 186 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENKRLQKELQ 270
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelk 92 
                               eLr +lk
  Niben101Scf12874g00009.1 271 ELR-ALK 276
                               **9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.7E-435142IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466891.42E-18175243IPR009057Homeodomain-like
PROSITE profilePS5007117.135182242IPR001356Homeobox domain
SMARTSM003896.9E-16184246IPR001356Homeobox domain
CDDcd000863.19E-15186243No hitNo description
Gene3DG3DSA:1.10.10.602.9E-17186240IPR009057Homeodomain-like
PfamPF000461.7E-15186240IPR001356Homeobox domain
PROSITE patternPS000270217240IPR017970Homeobox, conserved site
PfamPF021836.0E-10242276IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.1E-25242285IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MELALSLGGD TPKSFLFLEK SSSSSSLHEK LMDSSKDLGF CMGLGKCSED KSRKNMQRPS  60
HDLKEGHESK GSSDPLLQLD LLPFSPVSRD TSSQIHFPWL TENIAVEPGP AGKVLDMNRR  120
QLVAEETEEG AALSSPNSAI STFQVNFPIY RNGKKLLGKR ECEGDHVERW GNSSSRASDE  180
EDGSARKKLR LTKEQSAFLE ESFKEHNTLN PKQKLALAKQ LNLRPRQVEV WFQNRRARTK  240
LKQTEVDCEY LKKCCETLTE ENKRLQKELQ ELRALKSSQP FYMQLPATTL TMCPSCERVV  300
TATSSAAAAS AAAAANTALT LAKPEPFPFS PAQVQASQAA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234242RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798790.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like isoform X1
RefseqXP_016456346.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like isoform X1
SwissprotP466653e-94HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S3YVL00.0A0A1S3YVL0_TOBAC; homeobox-leucine zipper protein HAT14-like isoform X1
TrEMBLA0A1U7YIY50.0A0A1U7YIY5_NICSY; homeobox-leucine zipper protein HAT14-like isoform X1
STRINGXP_009798790.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-72homeobox from Arabidopsis thaliana