PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12874g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 190aa    MW: 20913.8 Da    PI: 4.5391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12874g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.8e-1569119155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               ++++GVr+++ +g  +A Irdp++    kr++lg+++t+eeAa  +++a+ kl+g
  Niben101Scf12874g00001.1  69 KKFRGVRQRP-WGCCAAVIRDPTQ---GKRVWLGTYDTPEEAATIYDEAAVKLKG 119
                               59********.**********954...3************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.09E-2769126No hitNo description
SMARTSM003801.0E-2570133IPR001471AP2/ERF domain
PROSITE profilePS5103218.96670127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2370126IPR001471AP2/ERF domain
PfamPF008475.7E-970119IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1870126IPR016177DNA-binding domain
PRINTSPR003671.2E-77182IPR001471AP2/ERF domain
PRINTSPR003671.2E-793109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MTPPEEADTI YDEAVVKLKG PGAITKFPKV LMADITETES VTNGGEKSEN DVALSPILFS  60
PDTDVTRRKK FRGVRQRPWG CCAAVIRDPT QGKRVWLGTY DTPEEAATIY DEAAVKLKGP  120
DAVTKFLKVL MADITKTESV SNGGEKSENV VALSPMSVLH NDYFTLFDDL RFCEVDAFGF  180
DVDSLFRLPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1769126159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798127.17e-74PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046829e-58PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1U7Y1V42e-72A0A1U7Y1V4_NICSY; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_009798127.13e-73(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.12e-26cytokinin response factor 3