PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12852g02006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 423aa    MW: 47782.8 Da    PI: 7.555
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12852g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  Niben101Scf12852g02006.1 14 KGLWSPEEDEKLIKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                              678*******************************************97 PP
2Myb_DNA-binding45.81.4e-1467109145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               rg +++eE+ l++++++ lG++ W+ Ia +++ gRt++++k+ w+
  Niben101Scf12852g02006.1  67 RGTFSQEEENLIIELHAVLGNK-WSQIATRLP-GRTDNEIKNLWN 109
                               899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-28664IPR009057Homeodomain-like
PROSITE profilePS5129425.558965IPR017930Myb domain
SuperFamilySSF466892.06E-2912108IPR009057Homeodomain-like
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001678.09E-121761No hitNo description
Gene3DG3DSA:1.10.10.606.7E-2565116IPR009057Homeodomain-like
SMARTSM007176.4E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129420.31366116IPR017930Myb domain
PfamPF002491.7E-1367109IPR001005SANT/Myb domain
CDDcd001673.63E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNKWS QIATRLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPNTHKPLS EVENEENAST NSNNKNTDKV SESSNNDQLN FAEAAHENGF STEKPKPSSM  180
TIMDHYPLIE TNNIAPPTHE FFTTNCKSPD ISNYLSFQHF NYTPNTNILF NNKNSAHDMV  240
SDHQFNCSLS PMSNSLLTTS PLARIKSPSL TTLPPTNSSF NINKFQNWEA CTISSNSNGS  300
SNSIELQSNC SFFDNNAAAF AWGSTAATDG SGKPEREEIK WSEYLQTPFS LCSNTIQNHQ  360
ISSQHQDLYN NETKSETHFM TQVSLGTTTT WLQNQAQESS LQNANLYNSN TYQRLPAAFG  420
QFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240029.10.0PREDICTED: protein ODORANT1-like
TrEMBLA0A1J6JTQ70.0A0A1J6JTQ7_NICAT; Transcription factor myb86
STRINGXP_009769917.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.19e-95myb domain protein 61