PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12639g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 493aa    MW: 52020.4 Da    PI: 8.1
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12639g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.6e-124771327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              ++ C +++rtG+C yG+rC+F+H++
  Niben101Scf12639g00004.1 47 EPDCIYYLRTGFCGYGARCRFNHPR 71
                              799********************96 PP
2zf-CCCH37.83.1e-1293117327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C++++rtG Ck+G++Ck++H++
  Niben101Scf12639g00004.1  93 QPVCQYYMRTGVCKFGASCKYHHPR 117
                               689********************96 PP
3zf-CCCH31.62.8e-10138162226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               ++++C+++ +tG+Ck+G +CkF+H+
  Niben101Scf12639g00004.1 138 GEKECSYYVKTGQCKFGITCKFHHP 162
                               7899********************8 PP
4zf-CCCH375.5e-12308334127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               +++++C++++++G CkyG++C+++H+p
  Niben101Scf12639g00004.1 308 PGQPECQYYMKYGDCKYGSSCRYHHPP 334
                               5789*********************97 PP
5zf-CCCH35.61.6e-11356380327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                ++C+++a++G Ck+G++CkF H++
  Niben101Scf12639g00004.1 356 APICSHYAQNGVCKFGPSCKFDHPM 380
                               589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.0E-64471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6524472IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-94771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-64873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55071IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-690117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.36690118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-693117IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-1093117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-595117IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117136164IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7138162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5138164IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389307335IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5311334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4313334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6352379IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7353380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878353381IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-9356380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5358378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MERYSGTQSM EVGAPVDPVS EWTLPGEPMW QLSLNTGPES YPERPNEPDC IYYLRTGFCG  60
YGARCRFNHP RDRNSVLGAM RATGGEYPER VGQPVCQYYM RTGVCKFGAS CKYHHPRQGG  120
GSPAPVTVNI YGYPLRPGEK ECSYYVKTGQ CKFGITCKFH HPHPAGAQVP APTAGPGPLA  180
VPAAVPAPHI YPMVQSPSVQ SAQQYGVVSG NWPVARPTLL PGSYIPGTYG SMLLPPGMVP  240
LPGWSPYSAP ASPAPSPSTQ PPPPAGPIYG ISQLSPSAPA YMGPYLSVAS ASGPSSSSQK  300
EHAFPERPGQ PECQYYMKYG DCKYGSSCRY HHPPEWSGPK TSFILSAMGL PLRPGAPICS  360
HYAQNGVCKF GPSCKFDHPM GMSYSPSASS LADMAVVPYP VGSSIGTLAP SSSSSDLRPE  420
LVSGSGRDAF STQISSMSTS SGSVGSMFSK GGHASHSGVQ QSEQSSNPSS GSSSSSADHR  480
DQAHTPVLSV CCS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226016.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ84W911e-158C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A314KSJ40.0A0A314KSJ4_NICAT; Zinc finger ccch domain-containing protein 34
STRINGXP_009588295.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-131C3H family protein