PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12639g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 346aa    MW: 39120.6 Da    PI: 5.0311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12639g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19e-1856104355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               + GVr+++ +gr++AeIrdp++   + r++lg+++ta+eAa a+++a+++++g
  Niben101Scf12639g00001.1  56 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTYDTAQEAALAYDRAALSMKG 104
                               66******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.58755112IPR001471AP2/ERF domain
CDDcd000187.69E-2855111No hitNo description
SMARTSM003803.3E-3155118IPR001471AP2/ERF domain
PRINTSPR003672.8E-75667IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2756111IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2056112IPR016177DNA-binding domain
PfamPF008472.0E-1158104IPR001471AP2/ERF domain
PRINTSPR003672.8E-77894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSSSSTPSSE NINQLPFSMF EPIRTPTGYS WLQRNTAVCQ PSEKRGRRKQ VEPGRFLGVR  60
RRPWGRYAAE IRDPTTKERH WLGTYDTAQE AALAYDRAAL SMKGTQARTN FIYTCDNNNS  120
FSSLISPFDN VQNFLQPNSH FNFKNATTQN NNKNVITTTT SDNETSNNSH DSYSSYGSSP  180
NENNSFFLSP SHENSGYLDC IVPDSCLKPP PSSTPQSKMT TKNSQENSNI DHHQNYMTTF  240
SKNPSNFLFN SGFWDGDDQE KYTSSWENSC ELSAMMMNNN IMSSSSEING NNINEMVDVG  300
NCYYSSMEID RDNMMVQPSE ITTNTTTTTS SVFQRFGDVE FGYSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1946111571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453834.10.0PREDICTED: ethylene-responsive transcription factor ERF086-like
TrEMBLA0A1S3YNJ30.0A0A1S3YNJ3_TOBAC; ethylene-responsive transcription factor ERF086-like
STRINGXP_009774843.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93072125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-48ERF family protein