PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf12628g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 228aa MW: 25885 Da PI: 6.1559 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.5e-16 | 14 | 84 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..........................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........................tWktIartmgkgRtlkqcksrwqk 46 rg W++eEde l+++ ++G W+ Ia++++ gRt++++k++w++ Niben101Scf12628g00002.1 14 RGQWSPEEDETLKNYLLKHGITagnwitlphragsislsfflshthyiIWSVIASKLP-GRTDNDVKNHWNT 84 89********************************************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-20 | 5 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.02 | 9 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-12 | 13 | 88 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.8E-10 | 14 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-11 | 14 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.85E-9 | 17 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGRTPCCDKT KVKRGQWSPE EDETLKNYLL KHGITAGNWI TLPHRAGSIS LSFFLSHTHY 60 IIWSVIASKL PGRTDNDVKN HWNTKLKKKL LATNANPTNN FESKQVFHSS SMVSREEEEQ 120 AVYSPIQFPC PNWESAGFNS ILNNNKSIVQ EDQKQFPLSR FSQDYSKIST SREGSMIFGS 180 SSVAMHENID LAWFDTFEGF PLDDEIIGAG LWTQQSVLED IDFPVTFS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800251.1 | 1e-133 | PREDICTED: transcription factor RAX1-like | ||||
TrEMBL | A0A1J6JFW1 | 1e-133 | A0A1J6JFW1_NICAT; Transcription factor rax2 | ||||
STRING | XP_009800251.1 | 1e-133 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15590 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 2e-24 | myb domain protein 87 |